HL_7A01_120

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_120 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.27

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7A01|1|h2|G|121
7A01|1|h2|G|122
7A01|1|h2|U|123
7A01|1|h2|U|124
7A01|1|h2|C|125
7A01|1|h2|C|126
7A01|1|h2|U|127
7A01|1|h2|C|128
7A01|1|h2|C|129

Current chains

Chain h2

5.8S RIBOSOMAL RNA

Nearby chains

Chain e2

Large subunit ribosomal RNA; LSU rRNA

Chain m2

Uncharacterized protein