HL_7A01_127
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7A01_127 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1915
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7A01|1|d2|A|32
7A01|1|d2|U|33
7A01|1|d2|C|34
7A01|1|d2|U|35
7A01|1|d2|C|36
7A01|1|d2|G|37
7A01|1|d2|U|38
7A01|1|d2|C|39
7A01|1|d2|U|40
7A01|1|d2|G|41
7A01|1|d2|A|42
7A01|1|d2|U|43
7A01|1|d2|C|44
7A01|1|d2|U|45
Current chains
- Chain d2
- 5S RIBOSOMAL RNA
Nearby chains
- Chain G2
- 60S ribosomal protein L5
- Chain Y2
- Ribosomal protein L11
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
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