HL_7A09_004

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

7A09|1|2|U|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A09_004 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3953

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7A09|1|2|C|195
7A09|1|2|C|196
7A09|1|2|U|197
7A09|1|2|U|198
7A09|1|2|C|199
7A09|1|2|G|200
7A09|1|2|C|201
7A09|1|2|G|202
7A09|1|2|G|203
7A09|1|2|G|204

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain t

40S ribosomal protein S8