HL_7A09_019

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A09_019 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1703

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7A09|1|2|A|957
7A09|1|2|G|958
7A09|1|2|G|959
7A09|1|2|U|960
7A09|1|2|G|961
7A09|1|2|A|962
7A09|1|2|A|963
7A09|1|2|A|964
7A09|1|2|U|965
7A09|1|2|U|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Eukaryotic translation initiation factor 2 subunit 1

Chain i

40S ribosomal protein S14