HL_7A1G_004

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases (A, C, G, U)

194U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A1G_004 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1545

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40039.1

Basepair signature

cWW

Number of instances in this motif group

6

Unit IDs

7A1G|1|2|C|190
7A1G|1|2|C|191
7A1G|1|2|U|192
7A1G|1|2|U|193
7A1G|1|2|U|194
7A1G|1|2|G|195

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain V

40S ribosomal protein S8-A