HL_7A1G_013

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

7A1G|1|2|U|493, 7A1G|1|2|U|494, 7A1G|1|2|C|495

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A1G_013 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3638

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7A1G|1|2|C|491
7A1G|1|2|A|492
7A1G|1|2|U|493
7A1G|1|2|U|494
7A1G|1|2|C|495
7A1G|1|2|G|496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains