HL_7A1G_023

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7A1G|1|2|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A1G_023 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1245

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7A1G|1|2|G|997
7A1G|1|2|A|998
7A1G|1|2|U|999
7A1G|1|2|C|1000
7A1G|1|2|A|1001
7A1G|1|2|G|1002
7A1G|1|2|A|1003
7A1G|1|2|U|1004
7A1G|1|2|A|1005
7A1G|1|2|C|1006
7A1G|1|2|C|1007

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein S14-B

Chain e

40S ribosomal protein S26-B