HL_7AAV_003
3D structure
- PDB id
- 7AAV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human pre-Bact-2 spliceosome core structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGCGCAA
- Length
- 7 nucleotides
- Bulged bases
- 7AAV|1|6|C|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7AAV_003 not in the Motif Atlas
- Geometric match to HL_8C3A_054
- Geometric discrepancy: 0.1478
- The information below is about HL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
7AAV|1|6|U|64
7AAV|1|6|G|65
7AAV|1|6|C|66
7AAV|1|6|G|67
7AAV|1|6|C|68
7AAV|1|6|A|69
7AAV|1|6|A|70
Current chains
- Chain 6
- U6 snRNA
Nearby chains
- Chain 5
- U5 spliceosomal RNA; U5 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain G
- Pleiotropic regulator 1
- Chain Z
- MINX M3 pre-mRNA
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