HL_7ABZ_061

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

7ABZ|1|1|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ABZ_061 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.4489

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ABZ|1|1|A|2471
7ABZ|1|1|G|2472
7ABZ|1|1|U|2473
7ABZ|1|1|U|2474
7ABZ|1|1|C|2475
7ABZ|1|1|A|2476
7ABZ|1|1|U|2477
7ABZ|1|1|A|2478
7ABZ|1|1|U|2479

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA; 10Sa RNA; SsrA

Chain F

50S ribosomal protein L6

Chain f

50S ribosomal protein L36