7ABZ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ABZ_001 | 1/1/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_7ABZ_002 | 1/1/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_7ABZ_003 | 1/1/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_7ABZ_113 | 1/1/134:145 | No text annotation | ||
| HL_7ABZ_004 | 1/1/136:143 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_7ABZ_005 | 1/1/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_7ABZ_006 | 1/1/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_7ABZ_007 | 1/1/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_7ABZ_008 | 1/1/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_7ABZ_009 | 1/1/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_7ABZ_010 | 1/1/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_7ABZ_011 | 1/1/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_7ABZ_012 | 1/1/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_7ABZ_013 | 1/1/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.3 | |
| HL_7ABZ_014 | 1/1/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_7ABZ_015 | 1/1/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_7ABZ_016 | 1/1/543:550 | No text annotation | ||
| HL_7ABZ_017 | 1/1/566:575 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_28252.6 | |
| HL_7ABZ_018 | 1/1/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_7ABZ_019 | 1/1/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_7ABZ_118 | 1/1/641:647 | GNRA | homologous HL_9DFE_019 HL_37824.7 | |
| HL_7ABZ_021 | 1/1/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_7ABZ_022 | 1/1/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.2 | |
| HL_7ABZ_023 | 1/1/779:785 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_7ABZ_024 | 1/1/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_7ABZ_025 | 1/1/884:892 | No text annotation | geometric HL_4V88_198 NA | |
| HL_7ABZ_114 | 1/1/955:962 | GNRA | homologous HL_5J7L_211 HL_37824.7 | |
| HL_7ABZ_027 | 1/1/978:985 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
| HL_7ABZ_028 | 1/1/1063:1076 | No text annotation | ||
| HL_7ABZ_029 | 1/1/1092:1099 | No text annotation | homologous HL_7RQB_030 NA | |
| HL_7ABZ_030 | 1/1/1171:1178 | No text annotation | ||
| HL_7ABZ_031 | 1/1/1222:1227 | GNRA | homologous HL_7A0S_031 HL_37824.7 | |
| HL_7ABZ_032 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.6 | |
| HL_7ABZ_033 | 1/1/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_7ABZ_034 | 1/1/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_7ABZ_035 | 1/1/1389:1398 | No text annotation | homologous HL_4WF9_035 HL_81545.2 | |
| HL_7ABZ_036 | 1/1/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_7ABZ_037 | 1/1/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_7ABZ_115 | 1/1/1531:1540 | No text annotation | ||
| HL_7ABZ_038 | 1/1/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_7ABZ_039 | 1/1/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_7ABZ_040 | 1/1/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_7ABZ_041 | 1/1/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_7ABZ_042 | 1/1/1691:1696 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
| HL_7ABZ_043 | 1/1/1728:1731 | Mini UNCG | geometric HL_5TBW_071 NA | |
| HL_7ABZ_044 | 1/1/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_7ABZ_045 | 1/1/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_7ABZ_046 | 1/1/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_7ABZ_047 | 1/1/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_7ABZ_048 | 1/1/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_7ABZ_049 | 1/1/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_20167.2 | |
| HL_7ABZ_050 | 1/1/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
| HL_7ABZ_051 | 1/1/2142:2151 | No text annotation | ||
| HL_7ABZ_052 | 1/1/2166:2171 | No text annotation | geometric HL_1GID_008 NA | |
| HL_7ABZ_053 | 1/1/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_7ABZ_054 | 1/1/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_7ABZ_055 | 1/1/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_7ABZ_119 | 1/1/2304:2312 | No text annotation | ||
| HL_7ABZ_057 | 1/1/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_7ABZ_058 | 1/1/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_7ABZ_059 | 1/1/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
| HL_7ABZ_060 | 1/1/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
| HL_7ABZ_061 | 1/1/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_7ABZ_062 | 1/1/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.3 | |
| HL_7ABZ_063 | 1/1/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_7ABZ_064 | 1/1/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_7ABZ_065 | 1/1/2658:2663 | GNRA | homologous HL_7A0S_063 HL_37824.7 | |
| HL_7ABZ_066 | 1/1/2701:2706 | Ribsomal LSU H95 | homologous HL_4WF9_061 HL_65794.5 | |
| HL_7ABZ_067 | 1/1/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_7ABZ_068 | 1/1/2795:2801 | Other HL | homologous HL_5J7L_200 HL_08100.1 | |
| HL_7ABZ_069 | 1/1/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_7ABZ_070 | 1/1/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_7ABZ_071 | 1/2/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_7ABZ_072 | 1/2/81:88 | No text annotation | ||
| HL_7ABZ_073 | 1/2/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_7ABZ_074 | 1/2/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_7ABZ_075 | 1/2/207:212 | No text annotation | geometric HL_4V88_198 NA | |
| HL_7ABZ_076 | 1/2/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_7ABZ_077 | 1/2/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_7ABZ_078 | 1/2/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_7ABZ_079 | 1/2/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_7ABZ_080 | 1/2/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_7ABZ_081 | 1/2/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_7ABZ_082 | 1/2/462:470 | GNRA related | homologous HL_5J7L_012 HL_81538.2 | |
| HL_7ABZ_116 | 1/2/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
| HL_7ABZ_084 | 1/2/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_7ABZ_085 | 1/2/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_7ABZ_086 | 1/2/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_7ABZ_087 | 1/2/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_7ABZ_088 | 1/2/840:846 | No text annotation | ||
| HL_7ABZ_089 | 1/2/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_7ABZ_090 | 1/2/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_7ABZ_091 | 1/2/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_7ABZ_092 | 1/2/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_7ABZ_093 | 1/2/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_7ABZ_094 | 1/2/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_7ABZ_120 | 1/2/1133:1141 | No text annotation | ||
| HL_7ABZ_095 | 1/2/1134:1141 | No text annotation | ||
| HL_7ABZ_096 | 1/2/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_7ABZ_097 | 1/2/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_7ABZ_098 | 1/2/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_7ABZ_099 | 1/2/1356:1366 | No text annotation | homologous HL_5J7L_029 HL_06226.4 | |
| HL_7ABZ_100 | 1/2/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_7ABZ_101 | 1/2/1515:1520 | GNRA | homologous HL_5J7L_031 HL_37824.7 | |
| HL_7ABZ_102 | 1/3/38:44 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7ABZ_103 | 1/3/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_7ABZ_104 | 1/4/53:64 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7ABZ_105 | 1/4/110:133 | No text annotation | ||
| HL_7ABZ_106 | 1/4/152:163 | No text annotation | ||
| HL_7ABZ_107 | 1/4/202:227 | No text annotation | ||
| HL_7ABZ_108 | 1/4/256:276 | No text annotation | ||
| HL_7ABZ_121 | 1/4/339:349 | No text annotation | ||
| HL_7ABZ_110 | 1/7/13:22 | No text annotation | homologous HL_3KFU_004 NA | |
| HL_7ABZ_111 | 1/7/30:40 | No text annotation | homologous HL_5EL4_222 NA | |
| HL_7ABZ_112 | 1/7/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5WWT_002 HL_28252.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ABZ_020 | GNRA related | ||
| HL_7ABZ_026 | No text annotation | ||
| HL_7ABZ_056 | No text annotation | ||
| HL_7ABZ_083 | No text annotation | ||
| HL_7ABZ_117 | No text annotation | ||
| HL_7ABZ_109 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ABZ_001 | 1/1/24:30, 1/1/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_7ABZ_002 | 1/1/36:37, 1/1/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7ABZ_003 | 1/1/43:44, 1/1/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_7ABZ_191 | 1/1/82:85, 1/1/97:104 | No text annotation | ||
| IL_7ABZ_005 | 1/1/183:184, 1/1/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_7ABZ_006 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_04346.10 | |
| IL_7ABZ_007 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_7ABZ_008 | 1/1/269:271, 1/1/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_7ABZ_009 | 1/1/273:281, 1/1/359:364 | No text annotation | ||
| IL_7ABZ_010 | 1/1/293:295, 1/1/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_7ABZ_011 | 1/1/481:484, 1/1/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_7ABZ_012 | 1/1/536:539, 1/1/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_7ABZ_013 | 1/1/564:566, 1/1/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_7ABZ_014 | 1/1/606:610, 1/1/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_7ABZ_015 | 1/1/672:674, 1/1/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_7ABZ_016 | 1/1/674:678, 1/1/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_7ABZ_017 | 1/1/697:698, 1/1/763:765 | Single bulged A | homologous IL_7A0S_016 IL_31462.5 | |
| IL_7ABZ_018 | 1/1/702:703, 1/1/728:730 | Single bulged G | homologous IL_5J7L_262 IL_00225.13 | |
| IL_7ABZ_019 | 1/1/703:707, 1/1/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_7ABZ_020 | 1/1/738:740, 1/1/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_7ABZ_021 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
| IL_7ABZ_022 | 1/1/844:847, 1/1/933:934 | Other IL | homologous IL_5J7L_267 IL_90729.1 | |
| IL_7ABZ_023 | 1/1/847:848, 1/1/930:933 | Multiple bulged bases | geometric IL_5XWP_001 IL_82107.4 | |
| IL_7ABZ_024 | 1/1/850:851, 1/1/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_7ABZ_025 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_7ABZ_026 | 1/1/862:863, 1/1/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.13 | |
| IL_7ABZ_027 | 1/1/864:868, 1/1/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_7ABZ_028 | 1/1/870:872, 1/1/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_7ABZ_029 | 1/1/875:879, 1/1/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_7ABZ_030 | 1/1/880:883, 1/1/893:897 | No text annotation | ||
| IL_7ABZ_031 | 1/1/994:996, 1/1/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_7ABZ_032 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_7ABZ_033 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot | geometric IL_4WF9_037 IL_41203.4 | |
| IL_7ABZ_034 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_7ABZ_035 | 1/1/1018:1024, 1/1/1140:1144 | Kink-turn related | geometric IL_5J7L_280 IL_57188.5 | |
| IL_7ABZ_036 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_7ABZ_037 | 1/1/1031:1034, 1/1/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_7ABZ_038 | 1/1/1038:1041, 1/1/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_7ABZ_039 | 1/1/1043:1051, 1/1/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_7ABZ_040 | 1/1/1059:1063, 1/1/1076:1079 | No text annotation | ||
| IL_7ABZ_041 | 1/1/1087:1090, 1/1/1101:1102 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_7ABZ_042 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
| IL_7ABZ_043 | 1/1/1202:1206, 1/1/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_7ABZ_044 | 1/1/1208:1215, 1/1/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_7ABZ_045 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_7ABZ_046 | 1/1/1310:1313, 1/1/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_7ABZ_047 | 1/1/1319:1323, 1/1/1331:1333 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_83150.2 | |
| IL_7ABZ_048 | 1/1/1351:1355, 1/1/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.2 | |
| IL_7ABZ_049 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_7ABZ_050 | 1/1/1415:1416, 1/1/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_7ABZ_051 | 1/1/1417:1421, 1/1/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_7ABZ_052 | 1/1/1432:1435, 1/1/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_7ABZ_053 | 1/1/1437:1440, 1/1/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_7ABZ_054 | 1/1/1450:1451, 1/1/1459:1461 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_7ABZ_193 | 1/1/1468:1471, 1/1/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_7ABZ_056 | 1/1/1474:1478, 1/1/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_7ABZ_057 | 1/1/1481:1482, 1/1/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_7ABZ_058 | 1/1/1488:1491, 1/1/1499:1501 | No text annotation | ||
| IL_7ABZ_059 | 1/1/1526:1529, 1/1/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_7ABZ_060 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_7ABZ_061 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_7ABZ_062 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_7ABZ_195 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
| IL_7ABZ_063 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
| IL_7ABZ_064 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_7ABZ_065 | 1/1/1712:1718, 1/1/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_7ABZ_066 | 1/1/1719:1726, 1/1/1734:1741 | No text annotation | ||
| IL_7ABZ_067 | 1/1/1727:1728, 1/1/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.15 | |
| IL_7ABZ_068 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A | homologous IL_4WF9_068 IL_31462.5 | |
| IL_7ABZ_069 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.5 | |
| IL_7ABZ_070 | 1/1/1837:1840, 1/1/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_95583.2 | |
| IL_7ABZ_071 | 1/1/1841:1842, 1/1/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_7ABZ_072 | 1/1/1846:1849, 1/1/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_7ABZ_197 | 1/1/1851:1860, 1/1/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_7ABZ_073 | 1/1/1864:1867, 1/1/1874:1878 | UAA/GAN | homologous IL_4WF9_075 IL_77691.5 | |
| IL_7ABZ_074 | 1/1/1933:1934, 1/1/1964:1967 | Bulged stacked bases | homologous IL_7A0S_071 IL_22551.3 | |
| IL_7ABZ_075 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_7ABZ_076 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_7ABZ_077 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_7ABZ_198 | 1/1/2067:2069, 1/1/2442:2443 | Single bulged U | homologous IL_5J7L_388 IL_89505.4 | |
| IL_7ABZ_080 | 1/1/2070:2071, 1/1/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.2 | |
| IL_7ABZ_081 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_85599.2 | |
| IL_7ABZ_082 | 1/1/2085:2087, 1/1/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_7ABZ_199 | 1/1/2096:2101, 1/1/2189:2193 | No text annotation | ||
| IL_7ABZ_200 | 1/1/2101:2103, 1/1/2186:2189 | No text annotation | ||
| IL_7ABZ_083 | 1/1/2103:2108, 1/1/2182:2186 | No text annotation | ||
| IL_7ABZ_084 | 1/1/2108:2120, 1/1/2179:2182 | No text annotation | ||
| IL_7ABZ_201 | 1/1/2108:2122, 1/1/2176:2182 | No text annotation | ||
| IL_7ABZ_085 | 1/1/2120:2122, 1/1/2176:2179 | Stack and bulge | geometric IL_2O3X_001 IL_31737.3 | |
| IL_7ABZ_202 | 1/1/2124:2127, 1/1/2161:2174 | No text annotation | ||
| IL_7ABZ_215 | 1/1/2127:2138, 1/1/2153:2161 | No text annotation | ||
| IL_7ABZ_087 | 1/1/2139:2142, 1/1/2151:2152 | No text annotation | ||
| IL_7ABZ_088 | 1/1/2202:2204, 1/1/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_7ABZ_089 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_7ABZ_090 | 1/1/2401:2403, 1/1/2414:2415 | No text annotation | ||
| IL_7ABZ_203 | 1/1/2453:2454, 1/1/2498:2500 | Single stack bend | homologous IL_5J7L_391 IL_26793.1 | |
| IL_7ABZ_204 | 1/1/2454:2455, 1/1/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.6 | |
| IL_7ABZ_205 | 1/1/2457:2459, 1/1/2493:2494 | Major groove platform | homologous IL_5J7L_393 IL_07039.3 | |
| IL_7ABZ_093 | 1/1/2459:2461, 1/1/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.2 | |
| IL_7ABZ_094 | 1/1/2466:2470, 1/1/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_7ABZ_206 | 1/1/2507:2508, 1/1/2580:2582 | Major groove platform | homologous IL_5J7L_394 IL_07039.3 | |
| IL_7ABZ_096 | 1/1/2510:2512, 1/1/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_07785.1 | |
| IL_7ABZ_097 | 1/1/2512:2513, 1/1/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_7ABZ_098 | 1/1/2522:2523, 1/1/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_7ABZ_100 | 1/1/2591:2592, 1/1/2601:2603 | Single bulged A | homologous IL_4WF9_098 IL_31462.5 | |
| IL_7ABZ_101 | 1/1/2636:2640, 1/1/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_7ABZ_102 | 1/1/2652:2658, 1/1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_7ABZ_103 | 1/1/2680:2684, 1/1/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_7ABZ_104 | 1/1/2687:2691, 1/1/2718:2722 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_7ABZ_105 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_7ABZ_106 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_7ABZ_107 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_7ABZ_108 | 1/1/2838:2839, 1/1/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_66635.5 | |
| IL_7ABZ_109 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_7ABZ_110 | 1/1/2847:2852, 1/1/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_7ABZ_111 | 1/2/30:32, 1/2/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_7ABZ_112 | 1/2/44:45, 1/2/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.5 | |
| IL_7ABZ_113 | 1/2/47:52, 1/2/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_7ABZ_114 | 1/2/54:56, 1/2/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_7ABZ_115 | 1/2/63:66, 1/2/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_7ABZ_116 | 1/2/67:69, 1/2/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_7ABZ_117 | 1/2/70:74, 1/2/96:98 | No text annotation | ||
| IL_7ABZ_118 | 1/2/75:79, 1/2/90:95 | No text annotation | ||
| IL_7ABZ_119 | 1/2/128:131, 1/2/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_7ABZ_120 | 1/2/132:136, 1/2/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_7ABZ_121 | 1/2/144:146, 1/2/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.5 | |
| IL_7ABZ_122 | 1/2/147:153, 1/2/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_7ABZ_123 | 1/2/203:207, 1/2/212:214 | No text annotation | ||
| IL_7ABZ_124 | 1/2/242:247, 1/2/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_7ABZ_125 | 1/2/249:252, 1/2/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_7ABZ_126 | 1/2/292:293, 1/2/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_7ABZ_127 | 1/2/367:369, 1/2/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_7ABZ_128 | 1/2/371:375, 1/2/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_7ABZ_129 | 1/2/375:376, 1/2/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_7ABZ_130 | 1/2/408:416, 1/2/427:434 | No text annotation | ||
| IL_7ABZ_131 | 1/2/440:442, 1/2/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_7ABZ_132 | 1/2/446:450, 1/2/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_7ABZ_133 | 1/2/450:455, 1/2/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
| IL_7ABZ_134 | 1/2/504:511, 1/2/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_7ABZ_135 | 1/2/515:521, 1/2/528:536 | Kink-turn related | homologous IL_5J7L_025 IL_54177.4 | |
| IL_7ABZ_136 | 1/2/569:575, 1/2/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_7ABZ_137 | 1/2/580:584, 1/2/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_7ABZ_209 | 1/2/594:596, 1/2/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_7ABZ_139 | 1/2/597:598, 1/2/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_7ABZ_140 | 1/2/605:612, 1/2/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_7ABZ_141 | 1/2/654:655, 1/2/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_7ABZ_142 | 1/2/659:660, 1/2/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_7ABZ_143 | 1/2/662:666, 1/2/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_7ABZ_210 | 1/2/673:677, 1/2/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_7ABZ_145 | 1/2/684:688, 1/2/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_7ABZ_146 | 1/2/774:778, 1/2/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_7ABZ_147 | 1/2/779:783, 1/2/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_7ABZ_216 | 1/2/887:894, 1/2/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_7ABZ_149 | 1/2/922:923, 1/2/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_7ABZ_150 | 1/2/925:927, 1/2/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_7ABZ_151 | 1/2/933:935, 1/2/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_7ABZ_152 | 1/2/953:954, 1/2/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_7ABZ_153 | 1/2/993:999, 1/2/1041:1045 | No text annotation | ||
| IL_7ABZ_154 | 1/2/1003:1008, 1/2/1022:1037 | No text annotation | ||
| IL_7ABZ_217 | 1/2/1009:1011, 1/2/1018:1021 | No text annotation | geometric IL_4V87_185 NA | |
| IL_7ABZ_156 | 1/2/1047:1048, 1/2/1209:1211 | Single stack bend | geometric IL_7A0S_083 IL_26793.1 | |
| IL_7ABZ_157 | 1/2/1048:1050, 1/2/1208:1209 | Single bulged U | geometric IL_3MEI_001 IL_89505.4 | |
| IL_7ABZ_159 | 1/2/1052:1056, 1/2/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_7ABZ_160 | 1/2/1057:1058, 1/2/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_7ABZ_161 | 1/2/1060:1061, 1/2/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_7ABZ_162 | 1/2/1061:1063, 1/2/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4KYY_003 IL_28037.2 | |
| IL_7ABZ_218 | 1/2/1124:1128, 1/2/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_7ABZ_164 | 1/2/1129:1132, 1/2/1142:1143 | Minor groove platform | geometric IL_3IWN_005 IL_15052.4 | |
| IL_7ABZ_165 | 1/2/1132:1134, 1/2/1141:1142 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7ABZ_166 | 1/2/1158:1161, 1/2/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_7ABZ_167 | 1/2/1242:1243, 1/2/1294:1296 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_7ABZ_168 | 1/2/1246:1253, 1/2/1284:1291 | No text annotation | ||
| IL_7ABZ_169 | 1/2/1255:1258, 1/2/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_7ABZ_170 | 1/2/1259:1263, 1/2/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_7ABZ_171 | 1/2/1303:1308, 1/2/1329:1334 | No text annotation | homologous IL_5J7L_057 IL_85536.2 | |
| IL_7ABZ_172 | 1/2/1399:1401, 1/2/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_7ABZ_173 | 1/2/1401:1404, 1/2/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_7ABZ_174 | 1/2/1405:1409, 1/2/1491:1496 | No text annotation | ||
| IL_7ABZ_175 | 1/2/1412:1414, 1/2/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_87907.2 | |
| IL_7ABZ_176 | 1/2/1416:1419, 1/2/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_7ABZ_177 | 1/2/1430:1435, 1/2/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_7ABZ_178 | 1/2/1439:1442, 1/2/1460:1462 | No text annotation | ||
| IL_7ABZ_179 | 1/2/1443:1444, 1/2/1457:1459 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_7ABZ_180 | 1/2/1444:1448, 1/2/1455:1457 | No text annotation | ||
| IL_7ABZ_181 | 1/3/17:18, 1/3/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.5 | |
| IL_7ABZ_182 | 1/3/23:28, 1/3/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_7ABZ_183 | 1/3/30:31, 1/3/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_7ABZ_184 | 1/3/34:38, 1/3/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_7ABZ_185 | 1/3/71:79, 1/3/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_7ABZ_214 | 1/4/22:41, 1/4/314:331 | No text annotation | ||
| IL_7ABZ_186 | 1/4/107:110, 1/4/133:136 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7ABZ_187 | 1/4/146:147, 1/4/168:170 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7ABZ_188 | 1/4/147:151, 1/4/164:168 | No text annotation | ||
| IL_7ABZ_189 | 1/4/250:252, 1/4/279:282 | No text annotation | ||
| IL_7ABZ_190 | 1/4/252:256, 1/4/276:279 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ABZ_004 | No text annotation | ||
| IL_7ABZ_192 | No text annotation | ||
| IL_7ABZ_055 | tSH-tHH-tHS | ||
| IL_7ABZ_194 | No text annotation | ||
| IL_7ABZ_196 | No text annotation | ||
| IL_7ABZ_078 | No text annotation | ||
| IL_7ABZ_079 | Isolated non-canonical cWW pair | ||
| IL_7ABZ_086 | No text annotation | ||
| IL_7ABZ_091 | No text annotation | ||
| IL_7ABZ_092 | No text annotation | ||
| IL_7ABZ_095 | No text annotation | ||
| IL_7ABZ_099 | No text annotation | ||
| IL_7ABZ_207 | Isolated non-canonical cWW pair | ||
| IL_7ABZ_208 | No text annotation | ||
| IL_7ABZ_138 | Major groove platform with extra pair | ||
| IL_7ABZ_144 | No text annotation | ||
| IL_7ABZ_211 | Isolated non-canonical cWW pair | ||
| IL_7ABZ_148 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_7ABZ_212 | 10x8 Sarcin-Ricin; G-bulge | ||
| IL_7ABZ_213 | No text annotation | ||
| IL_7ABZ_155 | No text annotation | ||
| IL_7ABZ_158 | No text annotation | ||
| IL_7ABZ_163 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ABZ_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_7ABZ_027 | 1/1/32:35, 1/1/445:461, 1/1/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_7ABZ_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_7ABZ_003 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_7ABZ_004 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_7ABZ_005 | 1/1/1055:1057, 1/1/1081:1087, 1/1/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_7ABZ_006 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_7ABZ_007 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_7ABZ_028 | 1/1/1344:1349, 1/1/1382:1387, 1/1/1400:1403 | No text annotation | ||
| J3_7ABZ_029 | 1/1/1424:1429, 1/1/1564:1565, 1/1/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_7ABZ_008 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_7ABZ_009 | 1/1/2124:2127, 1/1/2161:2166, 1/1/2171:2174 | No text annotation | ||
| J3_7ABZ_030 | 1/1/2282:2284, 1/1/2384:2395, 1/1/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_7ABZ_010 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation | ||
| J3_7ABZ_011 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_7ABZ_012 | 1/1/2789:2791, 1/1/2805:2806, 1/1/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_7ABZ_013 | 1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_7ABZ_014 | 1/2/46:47, 1/2/361:367, 1/2/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_7ABZ_031 | 1/2/46:52, 1/2/359:367, 1/2/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_7ABZ_015 | 1/2/586:588, 1/2/651:654, 1/2/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_7ABZ_032 | 1/2/586:588, 1/2/651:655, 1/2/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_7ABZ_016 | 1/2/672:673, 1/2/717:725, 1/2/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_7ABZ_017 | 1/2/826:829, 1/2/857:861, 1/2/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_7ABZ_018 | 1/2/936:939, 1/2/1344:1350, 1/2/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_7ABZ_019 | 1/2/943:946, 1/2/1235:1237, 1/2/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_7ABZ_020 | 1/2/955:962, 1/2/973:985, 1/2/1220:1225 | No text annotation | homologous J3_6CZR_062 NA | |
| J3_7ABZ_021 | 1/2/990:993, 1/2/1045:1047, 1/2/1211:1215 | No text annotation | ||
| J3_7ABZ_033 | 1/2/990:993, 1/2/1045:1048, 1/2/1209:1215 | No text annotation | ||
| J3_7ABZ_034 | 1/2/990:999, 1/2/1041:1048, 1/2/1209:1215 | No text annotation | ||
| J3_7ABZ_022 | 1/2/1063:1068, 1/2/1107:1113, 1/2/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_7ABZ_023 | 1/2/1073:1074, 1/2/1083:1087, 1/2/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
| J3_7ABZ_035 | 1/2/1116:1118, 1/2/1155:1158, 1/2/1181:1184 | No text annotation | geometric J3_5J7L_010 J3_82365.4 | |
| J3_7ABZ_036 | 1/2/1116:1118, 1/2/1155:1161, 1/2/1175:1184 | No text annotation | ||
| J3_7ABZ_025 | 1/2/1237:1242, 1/2/1296:1303, 1/2/1334:1337 | No text annotation | ||
| J3_7ABZ_026 | 1/3/10:16, 1/3/68:70, 1/3/106:110 | No text annotation | homologous J3_7A0S_014 NA | |
| J3_7ABZ_037 | 1/4/7:22, 1/4/331:336, 1/4/352:353 | No text annotation | ||
| J4_7ABZ_001 | 1/1/268:269, 1/1/370:375, 1/1/399:406, 1/1/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_7ABZ_002 | 1/1/297:301, 1/1/316:319, 1/1/323:325, 1/1/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_7ABZ_003 | 1/1/601:604, 1/1/624:628, 1/1/635:638, 1/1/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_7ABZ_004 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation | homologous J4_7A0S_004 J4_64571.5 | |
| J4_7ABZ_005 | 1/1/1310:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_7ABZ_006 | 1/1/1313:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_7ABZ_018 | 1/1/1444:1445, 1/1/1466:1467, 1/1/1525:1526, 1/1/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_7ABZ_007 | 1/1/1444:1446, 1/1/1465:1467, 1/1/1525:1526, 1/1/1546:1547 | No text annotation | ||
| J4_7ABZ_008 | 1/1/1772:1776, 1/1/1788:1792, 1/1/1827:1830, 1/1/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_7ABZ_009 | 1/1/1833:1835, 1/1/1905:1906, 1/1/1924:1933, 1/1/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_7ABZ_010 | 1/1/2285:2289, 1/1/2343:2347, 1/1/2370:2372, 1/1/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_7ABZ_011 | 1/1/2643:2646, 1/1/2674:2676, 1/1/2731:2735, 1/1/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_7ABZ_012 | 1/2/115:122, 1/2/239:240, 1/2/286:289, 1/2/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_7ABZ_013 | 1/2/142:144, 1/2/178:184, 1/2/193:198, 1/2/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_7ABZ_014 | 1/2/575:577, 1/2/764:769, 1/2/810:821, 1/2/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_7ABZ_015 | 1/4/41:107, 1/4/136:146, 1/4/170:250, 1/4/282:314 | No text annotation | ||
| J4_7ABZ_016 | 1/4/41:107, 1/4/136:146, 1/4/170:252, 1/4/279:314 | No text annotation | ||
| J4_7ABZ_017 | 1/7/7:10, 1/7/25:27, 1/7/43:49, 1/7/65:66 | No text annotation | homologous J4_7YSE_001 J4_70449.27 | |
| J5_7ABZ_001 | 1/1/47:54, 1/1/116:121, 1/1/130:131, 1/1/148:150, 1/1/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_7ABZ_002 | 1/1/531:533, 1/1/560:564, 1/1/577:579, 1/1/1261:1262, 1/1/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_7ABZ_003 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_7ABZ_004 | 1/1/1674:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_7ABZ_011 | 1/1/2057:2064, 1/1/2446:2453, 1/1/2500:2506, 1/1/2583:2588, 1/1/2606:2611 | No text annotation | ||
| J5_7ABZ_006 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2282, 1/1/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J5_7ABZ_007 | 1/2/36:39, 1/2/403:406, 1/2/436:440, 1/2/497:500, 1/2/545:548 | No text annotation | ||
| J5_7ABZ_008 | 1/2/36:39, 1/2/403:406, 1/2/436:442, 1/2/492:500, 1/2/545:548 | No text annotation | ||
| J5_7ABZ_009 | 1/2/58:61, 1/2/106:113, 1/2/314:316, 1/2/337:339, 1/2/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_7ABZ_010 | 1/4/41:107, 1/4/136:146, 1/4/170:202, 1/4/227:250, 1/4/282:314 | No text annotation | ||
| J6_7ABZ_001 | 1/1/45:46, 1/1/179:183, 1/1/214:224, 1/1/231:235, 1/1/262:266, 1/1/426:433 | No text annotation | ||
| J6_7ABZ_002 | 1/4/41:53, 1/4/64:107, 1/4/136:146, 1/4/170:202, 1/4/227:250, 1/4/282:314 | No text annotation | ||
| J7_7ABZ_001 | 1/1/8:15, 1/1/525:531, 1/1/2018:2023, 1/1/2040:2043, 1/1/2625:2630, 1/1/2788:2789, 1/1/2894:2895 | No text annotation | ||
| J7_7ABZ_002 | 1/1/817:822, 1/1/835:838, 1/1/940:946, 1/1/971:976, 1/1/987:991, 1/1/1163:1164, 1/1/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7ABZ_024 | No text annotation | ||
| J5_7ABZ_005 | No text annotation |
Coloring options: