HL_7ABZ_067

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7ABZ|1|1|G|2751, 7ABZ|1|1|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ABZ_067 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1392

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7ABZ|1|1|C|2745
7ABZ|1|1|U|2746
7ABZ|1|1|G|2747
7ABZ|1|1|A|2748
7ABZ|1|1|A|2749
7ABZ|1|1|A|2750
7ABZ|1|1|G|2751
7ABZ|1|1|C|2752
7ABZ|1|1|A|2753
7ABZ|1|1|U|2754
7ABZ|1|1|C|2755
7ABZ|1|1|U|2756
7ABZ|1|1|A|2757
7ABZ|1|1|A|2758
7ABZ|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36