HL_7ABZ_082

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ABZ_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.4675

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7ABZ|1|2|G|462
7ABZ|1|2|U|463
7ABZ|1|2|U|464
7ABZ|1|2|A|465
7ABZ|1|2|A|466
7ABZ|1|2|U|467
7ABZ|1|2|A|468
7ABZ|1|2|C|469
7ABZ|1|2|C|470

Current chains

Chain 2

16S ribosomal RNA

Nearby chains