HL_7ABZ_109
3D structure
- PDB id
- 7ABZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.21 Å
Loop
- Sequence
- GGG(5MU)(PSU)CAAC(PSU)CCC
- Length
- 13 nucleotides
- Bulged bases
- 7ABZ|1|4|C|343, 7ABZ|1|4|A|344, 7ABZ|1|4|C|346
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ABZ_109 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3635
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7ABZ|1|4|G|338
7ABZ|1|4|G|339
7ABZ|1|4|G|340
7ABZ|1|4|5MU|341
7ABZ|1|4|PSU|342
7ABZ|1|4|C|343
7ABZ|1|4|A|344
7ABZ|1|4|A|345
7ABZ|1|4|C|346
7ABZ|1|4|PSU|347
7ABZ|1|4|C|348
7ABZ|1|4|C|349
7ABZ|1|4|C|350
Current chains
- Chain 4
- transfer-messenger RNA (tmRNA)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- SsrA-binding protein
- Chain 6
- Elongation factor Tu 2
- Chain F
- 50S ribosomal protein L6
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