HL_7AC7_021

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGUAACACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AC7_021 not in the Motif Atlas

Geometric match to HL_5T83_002

Geometric discrepancy: 0.325

The information below is about HL_5T83_002

Detailed Annotation

Anticodon loop related

Broad Annotation

Guanidine riboswitch aptamer P2 hairpin

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

7AC7|1|1|G|712
7AC7|1|1|G|713
7AC7|1|1|U|714
7AC7|1|1|A|715
7AC7|1|1|A|716
7AC7|1|1|C|717
7AC7|1|1|A|718
7AC7|1|1|C|719
7AC7|1|1|U|720

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain t

30S ribosomal protein S15