3D structure

PDB id
7AC7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of accomodated trans-translation complex on E. Coli stalled ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
7AC7|1|1|A|1913, 7AC7|1|1|C|1914, 7AC7|1|1|A|1916
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7AC7_047 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.1512
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

7AC7|1|1|G|1910
7AC7|1|1|PSU|1911
7AC7|1|1|A|1912
7AC7|1|1|A|1913
7AC7|1|1|C|1914
7AC7|1|1|3TD|1915
7AC7|1|1|A|1916
7AC7|1|1|PSU|1917
7AC7|1|1|A|1918
7AC7|1|1|A|1919
7AC7|1|1|C|1920

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain 5
SsrA-binding protein
Chain 7
Transfer RNA; tRNA

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