HL_7AC7_110

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAG(H2U)CGG(H2U)AG

Length

10 nucleotides

Bulged bases

7AC7|1|7|C|17, 7AC7|1|7|G|18, 7AC7|1|7|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AC7_110 not in the Motif Atlas

Homologous match to HL_3TUP_001

Geometric discrepancy: 0.129

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

7AC7|1|7|C|13
7AC7|1|7|A|14
7AC7|1|7|G|15
7AC7|1|7|H2U|16
7AC7|1|7|C|17
7AC7|1|7|G|18
7AC7|1|7|G|19
7AC7|1|7|H2U|20
7AC7|1|7|A|21
7AC7|1|7|G|22

Current chains

Chain 7

tRNA-Phe

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain E

50S ribosomal protein L5