3D structure

PDB id
7ACJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of translocated trans-translation complex on E. coli stalled ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGGUCAACCCGACUUAC
Length
18 nucleotides
Bulged bases
7ACJ|1|1|G|882, 7ACJ|1|1|C|888, 7ACJ|1|1|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ACJ_025 not in the Motif Atlas
Geometric match to HL_5ID6_001
Geometric discrepancy: 0.2155
The information below is about HL_5ID6_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.2
Basepair signature
cWW-F
Number of instances in this motif group
7

Unit IDs

7ACJ|1|1|G|880
7ACJ|1|1|G|881
7ACJ|1|1|G|882
7ACJ|1|1|G|883
7ACJ|1|1|U|884
7ACJ|1|1|C|885
7ACJ|1|1|A|886
7ACJ|1|1|A|887
7ACJ|1|1|C|888
7ACJ|1|1|C|889
7ACJ|1|1|C|890
7ACJ|1|1|G|891
7ACJ|1|1|A|892
7ACJ|1|1|C|893
7ACJ|1|1|U|894
7ACJ|1|1|U|895
7ACJ|1|1|A|896
7ACJ|1|1|C|897

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 4
Transfer-messenger RNA; tmRNA
Chain M
50S ribosomal protein L16

Coloring options:


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