7ACJ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ACJ_001 | 1/1/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_7ACJ_002 | 1/1/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_7ACJ_003 | 1/1/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_7ACJ_116 | 1/1/137:142 | UNCG | geometric HL_7L0Z_001 HL_61337.1 | |
| HL_7ACJ_005 | 1/1/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_7ACJ_006 | 1/1/194:201 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_7ACJ_007 | 1/1/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_7ACJ_008 | 1/1/246:252 | No text annotation | homologous HL_4WF9_008 HL_76371.1 | |
| HL_7ACJ_009 | 1/1/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.1 | |
| HL_7ACJ_010 | 1/1/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_7ACJ_011 | 1/1/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_7ACJ_012 | 1/1/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_7ACJ_013 | 1/1/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.4 | |
| HL_7ACJ_014 | 1/1/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.1 | |
| HL_7ACJ_015 | 1/1/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_7ACJ_016 | 1/1/544:549 | No text annotation | ||
| HL_7ACJ_017 | 1/1/566:575 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.1 | |
| HL_7ACJ_018 | 1/1/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_7ACJ_019 | 1/1/629:634 | GNRA | homologous HL_4WF9_020 HL_34789.1 | |
| HL_7ACJ_020 | 1/1/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_7ACJ_021 | 1/1/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_7ACJ_022 | 1/1/744:753 | No text annotation | homologous HL_5J7L_155 NA | |
| HL_7ACJ_023 | 1/1/779:785 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_7ACJ_024 | 1/1/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_7ACJ_025 | 1/1/880:897 | No text annotation | geometric HL_5ID6_001 HL_69752.3 | |
| HL_7ACJ_110 | 1/1/955:962 | GNRA | homologous HL_5J7L_211 NA | |
| HL_7ACJ_027 | 1/1/978:985 | No text annotation | homologous HL_4WF9_028 HL_47171.1 | |
| HL_7ACJ_028 | 1/1/1091:1100 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_7ACJ_029 | 1/1/1172:1177 | No text annotation | ||
| HL_7ACJ_030 | 1/1/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_7ACJ_031 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_7ACJ_032 | 1/1/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_7ACJ_033 | 1/1/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_7ACJ_034 | 1/1/1389:1398 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_7ACJ_035 | 1/1/1451:1459 | Mini UNCG | geometric HL_4L8H_001 HL_90436.1 | |
| HL_7ACJ_036 | 1/1/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_7ACJ_037 | 1/1/1532:1539 | No text annotation | ||
| HL_7ACJ_038 | 1/1/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_7ACJ_039 | 1/1/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_7ACJ_040 | 1/1/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_7ACJ_041 | 1/1/1691:1696 | UNCG | geometric HL_5J7L_030 NA | |
| HL_7ACJ_042 | 1/1/1726:1734 | No text annotation | ||
| HL_7ACJ_043 | 1/1/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_7ACJ_044 | 1/1/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_7ACJ_045 | 1/1/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_7ACJ_046 | 1/1/1868:1873 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_7ACJ_047 | 1/1/1910:1920 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_7ACJ_048 | 1/1/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_61418.1 | |
| HL_7ACJ_049 | 1/1/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_7ACJ_050 | 1/1/2143:2148 | No text annotation | ||
| HL_7ACJ_051 | 1/1/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_7ACJ_052 | 1/1/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_7ACJ_053 | 1/1/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_7ACJ_054 | 1/1/2303:2313 | No text annotation | homologous HL_5J7L_188 NA | |
| HL_7ACJ_055 | 1/1/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_7ACJ_056 | 1/1/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_7ACJ_057 | 1/1/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_7ACJ_058 | 1/1/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_7ACJ_059 | 1/1/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_7ACJ_060 | 1/1/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_7ACJ_061 | 1/1/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_7ACJ_062 | 1/1/2594:2599 | GNRA | homologous HL_7A0S_062 HL_34789.1 | |
| HL_7ACJ_063 | 1/1/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_7ACJ_064 | 1/1/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_7ACJ_065 | 1/1/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_7ACJ_066 | 1/1/2796:2799 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_7ACJ_067 | 1/1/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_7ACJ_068 | 1/1/2856:2861 | GNRA | homologous HL_7A0S_068 HL_34789.1 | |
| HL_7ACJ_069 | 1/2/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_7ACJ_070 | 1/2/78:91 | No text annotation | ||
| HL_7ACJ_071 | 1/2/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_7ACJ_072 | 1/2/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_7ACJ_073 | 1/2/203:214 | No text annotation | ||
| HL_7ACJ_074 | 1/2/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_7ACJ_075 | 1/2/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_7ACJ_076 | 1/2/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_7ACJ_077 | 1/2/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_7ACJ_078 | 1/2/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_7ACJ_079 | 1/2/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.1 | |
| HL_7ACJ_080 | 1/2/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
| HL_7ACJ_113 | 1/2/522:527 | GNRA variation | homologous HL_4LFB_033 HL_34789.1 | |
| HL_7ACJ_082 | 1/2/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_7ACJ_083 | 1/2/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_7ACJ_084 | 1/2/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_7ACJ_085 | 1/2/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_7ACJ_086 | 1/2/840:846 | No text annotation | ||
| HL_7ACJ_087 | 1/2/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_7ACJ_088 | 1/2/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_7ACJ_089 | 1/2/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_7ACJ_090 | 1/2/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_7ACJ_091 | 1/2/1027:1034 | No text annotation | geometric HL_4V9F_003 HL_75660.6 | |
| HL_7ACJ_092 | 1/2/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_7ACJ_093 | 1/2/1089:1096 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_7ACJ_114 | 1/2/1134:1140 | No text annotation | homologous HL_5J7L_025 NA | |
| HL_7ACJ_095 | 1/2/1165:1171 | GNRA | homologous HL_5J7L_026 NA | |
| HL_7ACJ_096 | 1/2/1265:1270 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_7ACJ_097 | 1/2/1312:1325 | tRNA D-loop | geometric HL_6JXM_001 NA | |
| HL_7ACJ_098 | 1/2/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_7ACJ_099 | 1/2/1449:1454 | UNCG | homologous HL_5J7L_030 NA | |
| HL_7ACJ_100 | 1/2/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_7ACJ_101 | 1/3/38:44 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_7ACJ_102 | 1/3/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_7ACJ_103 | 1/4/51:65 | No text annotation | ||
| HL_7ACJ_115 | 1/4/58:75 | No text annotation | ||
| HL_7ACJ_104 | 1/4/115:129 | No text annotation | ||
| HL_7ACJ_105 | 1/4/152:163 | No text annotation | ||
| HL_7ACJ_106 | 1/4/210:219 | No text annotation | ||
| HL_7ACJ_107 | 1/4/259:272 | No text annotation | ||
| HL_7ACJ_108 | 1/4/340:348 | T-loop with 2 stacked bulged bases | homologous HL_4V8Q_110 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ACJ_109 | No text annotation | ||
| HL_7ACJ_004 | No text annotation | ||
| HL_7ACJ_026 | No text annotation | ||
| HL_7ACJ_111 | No text annotation | ||
| HL_7ACJ_112 | No text annotation | ||
| HL_7ACJ_081 | No text annotation | ||
| HL_7ACJ_094 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ACJ_001 | 1/1/24:30, 1/1/510:516 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_7ACJ_002 | 1/1/36:37, 1/1/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7ACJ_003 | 1/1/43:44, 1/1/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_7ACJ_004 | 1/1/81:85, 1/1/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_7ACJ_005 | 1/1/183:184, 1/1/212:214 | Single stack bend | homologous IL_7A0S_005 IL_15011.1 | |
| IL_7ACJ_006 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_7ACJ_007 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_7ACJ_008 | 1/1/269:271, 1/1/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_7ACJ_009 | 1/1/274:281, 1/1/359:363 | No text annotation | homologous IL_5J7L_253 NA | |
| IL_7ACJ_187 | 1/1/291:295, 1/1/343:349 | No text annotation | ||
| IL_7ACJ_010 | 1/1/293:295, 1/1/343:347 | No text annotation | geometric IL_7RQB_013 NA | |
| IL_7ACJ_012 | 1/1/481:484, 1/1/496:509 | No text annotation | geometric IL_5J7L_255 NA | |
| IL_7ACJ_013 | 1/1/536:539, 1/1/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_7ACJ_014 | 1/1/564:566, 1/1/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_71625.1 | |
| IL_7ACJ_015 | 1/1/606:610, 1/1/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_7ACJ_016 | 1/1/672:674, 1/1/806:808 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_7ACJ_017 | 1/1/674:678, 1/1/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_7ACJ_018 | 1/1/697:698, 1/1/763:765 | Single bulged A | geometric IL_4V9F_025 IL_14190.1 | |
| IL_7ACJ_019 | 1/1/702:703, 1/1/728:730 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
| IL_7ACJ_020 | 1/1/703:707, 1/1/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_7ACJ_021 | 1/1/738:740, 1/1/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_7ACJ_022 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
| IL_7ACJ_023 | 1/1/844:847, 1/1/933:934 | 90 degree turn | homologous IL_5J7L_267 NA | |
| IL_7ACJ_188 | 1/1/844:848, 1/1/930:934 | No text annotation | homologous IL_5J7L_399 NA | |
| IL_7ACJ_024 | 1/1/847:848, 1/1/930:933 | Major groove intercalation | geometric IL_1U9S_003 NA | |
| IL_7ACJ_025 | 1/1/850:851, 1/1/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_7ACJ_026 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_7ACJ_027 | 1/1/862:863, 1/1/913:915 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_7ACJ_028 | 1/1/864:868, 1/1/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_7ACJ_029 | 1/1/870:872, 1/1/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_7ACJ_030 | 1/1/875:879, 1/1/898:902 | No text annotation | ||
| IL_7ACJ_031 | 1/1/994:996, 1/1/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_7ACJ_032 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_7ACJ_033 | 1/1/1003:1011, 1/1/1150:1152 | No text annotation | ||
| IL_7ACJ_034 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_7ACJ_035 | 1/1/1018:1024, 1/1/1140:1144 | No text annotation | homologous IL_7RQB_039 NA | |
| IL_7ACJ_036 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_7ACJ_037 | 1/1/1031:1035, 1/1/1120:1123 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7ACJ_038 | 1/1/1038:1041, 1/1/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_7ACJ_215 | 1/1/1043:1053, 1/1/1106:1112 | No text annotation | ||
| IL_7ACJ_216 | 1/1/1055:1090, 1/1/1101:1104 | No text annotation | ||
| IL_7ACJ_041 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.4 | |
| IL_7ACJ_042 | 1/1/1202:1206, 1/1/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_7ACJ_043 | 1/1/1208:1215, 1/1/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_7ACJ_044 | 1/1/1218:1220, 1/1/1229:1231 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_7ACJ_045 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_7ACJ_046 | 1/1/1310:1313, 1/1/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_7ACJ_192 | 1/1/1317:1320, 1/1/1333:1335 | No text annotation | ||
| IL_7ACJ_193 | 1/1/1320:1323, 1/1/1331:1333 | No text annotation | ||
| IL_7ACJ_048 | 1/1/1351:1355, 1/1/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.3 | |
| IL_7ACJ_049 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_7ACJ_050 | 1/1/1415:1416, 1/1/1582:1587 | No text annotation | homologous IL_5J7L_294 NA | |
| IL_7ACJ_051 | 1/1/1417:1421, 1/1/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_7ACJ_052 | 1/1/1432:1435, 1/1/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_7ACJ_053 | 1/1/1437:1440, 1/1/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_7ACJ_054 | 1/1/1450:1451, 1/1/1459:1461 | Single bulged U | homologous IL_5J7L_298 NA | |
| IL_7ACJ_217 | 1/1/1468:1471, 1/1/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_7ACJ_056 | 1/1/1474:1478, 1/1/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_7ACJ_057 | 1/1/1481:1482, 1/1/1507:1510 | 180 degree turn | homologous IL_5J7L_301 NA | |
| IL_7ACJ_058 | 1/1/1489:1491, 1/1/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_7ACJ_218 | 1/1/1526:1529, 1/1/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_7ACJ_060 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_7ACJ_061 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_7ACJ_062 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_7ACJ_195 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_7ACJ_063 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_7ACJ_064 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_7ACJ_065 | 1/1/1710:1716, 1/1/1745:1748 | No text annotation | ||
| IL_7ACJ_219 | 1/1/1710:1718, 1/1/1742:1748 | No text annotation | ||
| IL_7ACJ_066 | 1/1/1716:1718, 1/1/1742:1745 | No text annotation | ||
| IL_7ACJ_067 | 1/1/1720:1724, 1/1/1736:1740 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_7ACJ_068 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A | homologous IL_4WF9_068 IL_14190.1 | |
| IL_7ACJ_069 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_7ACJ_070 | 1/1/1837:1840, 1/1/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_7ACJ_071 | 1/1/1841:1842, 1/1/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_7ACJ_072 | 1/1/1846:1849, 1/1/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_73108.1 | |
| IL_7ACJ_199 | 1/1/1851:1860, 1/1/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_7ACJ_073 | 1/1/1864:1867, 1/1/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_7ACJ_074 | 1/1/1933:1934, 1/1/1964:1967 | Bulged stacked bases | geometric IL_7A0S_071 IL_24886.1 | |
| IL_7ACJ_075 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation | homologous IL_5J7L_319 NA | |
| IL_7ACJ_076 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform | homologous IL_7A0S_073 IL_48076.7 | |
| IL_7ACJ_077 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation | homologous IL_4WF9_079 IL_80025.1 | |
| IL_7ACJ_200 | 1/1/2067:2069, 1/1/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_97561.1 | |
| IL_7ACJ_080 | 1/1/2070:2071, 1/1/2438:2441 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_7ACJ_081 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_7ACJ_082 | 1/1/2085:2087, 1/1/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.1 | |
| IL_7ACJ_201 | 1/1/2097:2124, 1/1/2174:2192 | No text annotation | ||
| IL_7ACJ_083 | 1/1/2124:2127, 1/1/2161:2174 | No text annotation | ||
| IL_7ACJ_084 | 1/1/2127:2143, 1/1/2148:2161 | No text annotation | ||
| IL_7ACJ_085 | 1/1/2202:2204, 1/1/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_7ACJ_086 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_7ACJ_087 | 1/1/2401:2403, 1/1/2414:2415 | Single bulged U | homologous IL_4WF9_088 IL_97561.1 | |
| IL_7ACJ_202 | 1/1/2453:2454, 1/1/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_15011.1 | |
| IL_7ACJ_203 | 1/1/2454:2455, 1/1/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.7 | |
| IL_7ACJ_089 | 1/1/2456:2459, 1/1/2493:2495 | No text annotation | homologous IL_5J7L_336 NA | |
| IL_7ACJ_204 | 1/1/2457:2461, 1/1/2489:2494 | No text annotation | ||
| IL_7ACJ_090 | 1/1/2459:2461, 1/1/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7A0S_086 IL_36931.1 | |
| IL_7ACJ_091 | 1/1/2466:2470, 1/1/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_7ACJ_205 | 1/1/2507:2508, 1/1/2580:2582 | Major groove platform | homologous IL_5J7L_394 NA | |
| IL_7ACJ_093 | 1/1/2510:2512, 1/1/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_68118.1 | |
| IL_7ACJ_094 | 1/1/2512:2513, 1/1/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_7ACJ_095 | 1/1/2522:2523, 1/1/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_7ACJ_097 | 1/1/2591:2592, 1/1/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_7ACJ_098 | 1/1/2636:2640, 1/1/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_7ACJ_099 | 1/1/2652:2658, 1/1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.5 | |
| IL_7ACJ_206 | 1/1/2680:2684, 1/1/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_7ACJ_101 | 1/1/2687:2691, 1/1/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_7ACJ_102 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_7ACJ_103 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_7ACJ_104 | 1/1/2795:2796, 1/1/2799:2801 | Single bulged A | geometric IL_4V9F_025 IL_14190.1 | |
| IL_7ACJ_105 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_7ACJ_106 | 1/1/2838:2839, 1/1/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_78536.1 | |
| IL_7ACJ_107 | 1/1/2843:2846, 1/1/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_7ACJ_108 | 1/1/2847:2852, 1/1/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_7ACJ_109 | 1/2/30:32, 1/2/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_7ACJ_110 | 1/2/44:45, 1/2/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_7ACJ_111 | 1/2/47:52, 1/2/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_7ACJ_112 | 1/2/54:56, 1/2/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_7ACJ_113 | 1/2/63:66, 1/2/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_7ACJ_114 | 1/2/67:69, 1/2/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_7ACJ_115 | 1/2/70:73, 1/2/97:98 | Minor groove platform | geometric IL_5J7L_007 NA | |
| IL_7ACJ_116 | 1/2/73:78, 1/2/91:97 | No text annotation | ||
| IL_7ACJ_117 | 1/2/128:131, 1/2/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_7ACJ_118 | 1/2/132:136, 1/2/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_7ACJ_119 | 1/2/147:154, 1/2/167:175 | No text annotation | ||
| IL_7ACJ_120 | 1/2/242:247, 1/2/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_7ACJ_121 | 1/2/249:252, 1/2/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_7ACJ_122 | 1/2/292:293, 1/2/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_7ACJ_123 | 1/2/367:369, 1/2/392:393 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_7ACJ_124 | 1/2/371:375, 1/2/389:390 | C-loop | geometric IL_5J7L_018 NA | |
| IL_7ACJ_210 | 1/2/371:376, 1/2/387:390 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_7ACJ_125 | 1/2/375:376, 1/2/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_7ACJ_126 | 1/2/409:416, 1/2/427:433 | No text annotation | homologous IL_5J7L_020 NA | |
| IL_7ACJ_127 | 1/2/440:442, 1/2/492:497 | No text annotation | homologous IL_5J7L_021 NA | |
| IL_7ACJ_128 | 1/2/446:450, 1/2/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_7ACJ_220 | 1/2/450:455, 1/2/477:483 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_7ACJ_130 | 1/2/504:511, 1/2/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_7ACJ_131 | 1/2/515:521, 1/2/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7ACJ_132 | 1/2/569:575, 1/2/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_7ACJ_133 | 1/2/580:584, 1/2/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_7ACJ_134 | 1/2/594:596, 1/2/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_7ACJ_221 | 1/2/597:598, 1/2/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_7ACJ_136 | 1/2/605:612, 1/2/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_7ACJ_137 | 1/2/654:655, 1/2/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.1 | |
| IL_7ACJ_138 | 1/2/659:660, 1/2/745:747 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_7ACJ_139 | 1/2/662:666, 1/2/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_7ACJ_211 | 1/2/673:677, 1/2/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
| IL_7ACJ_141 | 1/2/684:688, 1/2/699:706 | Kink-turn | geometric IL_7A0S_004 IL_94910.1 | |
| IL_7ACJ_142 | 1/2/774:778, 1/2/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_7ACJ_143 | 1/2/779:783, 1/2/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_7ACJ_144 | 1/2/887:894, 1/2/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_7ACJ_145 | 1/2/922:923, 1/2/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_7ACJ_146 | 1/2/925:927, 1/2/1390:1391 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_7ACJ_147 | 1/2/953:955, 1/2/1225:1228 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_7ACJ_148 | 1/2/993:997, 1/2/1044:1045 | Minor groove platform | geometric IL_5J7L_043 NA | |
| IL_7ACJ_149 | 1/2/998:999, 1/2/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_7ACJ_150 | 1/2/1048:1050, 1/2/1208:1209 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_7ACJ_152 | 1/2/1052:1056, 1/2/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_7ACJ_153 | 1/2/1057:1058, 1/2/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_7ACJ_154 | 1/2/1060:1061, 1/2/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_97561.1 | |
| IL_7ACJ_155 | 1/2/1061:1063, 1/2/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_7ACJ_156 | 1/2/1124:1128, 1/2/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_7ACJ_157 | 1/2/1129:1132, 1/2/1142:1143 | Minor groove platform | geometric IL_5J7L_052 NA | |
| IL_7ACJ_158 | 1/2/1132:1134, 1/2/1141:1142 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_7ACJ_159 | 1/2/1158:1161, 1/2/1175:1181 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_7ACJ_160 | 1/2/1247:1253, 1/2/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_7ACJ_161 | 1/2/1255:1258, 1/2/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_7ACJ_162 | 1/2/1259:1263, 1/2/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_7ACJ_163 | 1/2/1399:1401, 1/2/1501:1504 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_7ACJ_164 | 1/2/1401:1404, 1/2/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7ACJ_222 | 1/2/1405:1409, 1/2/1491:1496 | Partly complementary | homologous IL_6CZR_167 NA | |
| IL_7ACJ_166 | 1/2/1412:1414, 1/2/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_01003.1 | |
| IL_7ACJ_167 | 1/2/1416:1419, 1/2/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_7ACJ_168 | 1/2/1430:1435, 1/2/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_7ACJ_169 | 1/2/1440:1442, 1/2/1460:1461 | Single bulged A | geometric IL_4V9F_032 IL_14190.1 | |
| IL_7ACJ_170 | 1/2/1445:1448, 1/2/1455:1457 | No text annotation | homologous IL_5J7L_065 NA | |
| IL_7ACJ_171 | 1/2/1508:1509, 1/2/1526:1528 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_7ACJ_172 | 1/3/2:4, 1/3/117:118 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
| IL_7ACJ_173 | 1/3/4:5, 1/3/115:117 | Single stack bend | geometric IL_4WF9_007 IL_15011.1 | |
| IL_7ACJ_174 | 1/3/17:18, 1/3/65:67 | Major groove intercalation | homologous IL_5J7L_355 NA | |
| IL_7ACJ_175 | 1/3/23:28, 1/3/56:60 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_7ACJ_176 | 1/3/30:31, 1/3/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7ACJ_177 | 1/3/32:38, 1/3/44:50 | No text annotation | ||
| IL_7ACJ_178 | 1/3/71:79, 1/3/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_7ACJ_213 | 1/4/7:23, 1/4/329:353 | No text annotation | ||
| IL_7ACJ_179 | 1/4/23:25, 1/4/328:329 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_7ACJ_214 | 1/4/26:36, 1/4/318:327 | No text annotation | ||
| IL_7ACJ_180 | 1/4/37:41, 1/4/313:317 | No text annotation | ||
| IL_7ACJ_181 | 1/4/41:45, 1/4/306:313 | No text annotation | ||
| IL_7ACJ_182 | 1/4/110:114, 1/4/130:133 | No text annotation | ||
| IL_7ACJ_183 | 1/4/144:146, 1/4/169:175 | No text annotation | ||
| IL_7ACJ_184 | 1/4/147:152, 1/4/163:168 | No text annotation | ||
| IL_7ACJ_185 | 1/4/202:209, 1/4/220:227 | No text annotation | ||
| IL_7ACJ_186 | 1/4/252:259, 1/4/272:279 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ACJ_011 | Isolated cWH basepair | ||
| IL_7ACJ_189 | No text annotation | ||
| IL_7ACJ_190 | No text annotation | ||
| IL_7ACJ_039 | No text annotation | ||
| IL_7ACJ_040 | No text annotation | ||
| IL_7ACJ_191 | No text annotation | ||
| IL_7ACJ_047 | Major groove minor groove platform with tHH | ||
| IL_7ACJ_055 | No text annotation | ||
| IL_7ACJ_059 | Triple sheared related | ||
| IL_7ACJ_194 | No text annotation | ||
| IL_7ACJ_196 | No text annotation | ||
| IL_7ACJ_197 | No text annotation | ||
| IL_7ACJ_198 | Major groove minor groove platform with extra cWW | ||
| IL_7ACJ_078 | No text annotation | ||
| IL_7ACJ_079 | No text annotation | ||
| IL_7ACJ_088 | No text annotation | ||
| IL_7ACJ_092 | No text annotation | ||
| IL_7ACJ_096 | No text annotation | ||
| IL_7ACJ_100 | No text annotation | ||
| IL_7ACJ_207 | No text annotation | ||
| IL_7ACJ_208 | No text annotation | ||
| IL_7ACJ_209 | No text annotation | ||
| IL_7ACJ_129 | No text annotation | ||
| IL_7ACJ_135 | 8-nt loop receptor | ||
| IL_7ACJ_140 | No text annotation | ||
| IL_7ACJ_151 | Isolated non-canonical cWW pair | ||
| IL_7ACJ_212 | No text annotation | ||
| IL_7ACJ_165 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ACJ_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_7ACJ_026 | 1/1/32:35, 1/1/445:461, 1/1/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_7ACJ_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_7ACJ_003 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_7ACJ_004 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_7ACJ_005 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_7ACJ_006 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_7ACJ_007 | 1/1/1344:1349, 1/1/1382:1385, 1/1/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_7ACJ_027 | 1/1/1424:1429, 1/1/1564:1565, 1/1/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_7ACJ_008 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_7ACJ_039 | 1/1/2282:2284, 1/1/2384:2395, 1/1/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_7ACJ_009 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation | ||
| J3_7ACJ_010 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_7ACJ_011 | 1/1/2789:2791, 1/1/2805:2806, 1/1/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_7ACJ_040 | 1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_7ACJ_013 | 1/2/46:47, 1/2/361:367, 1/2/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_7ACJ_014 | 1/2/586:588, 1/2/651:654, 1/2/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_7ACJ_030 | 1/2/586:588, 1/2/651:655, 1/2/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_7ACJ_015 | 1/2/672:673, 1/2/717:725, 1/2/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_7ACJ_016 | 1/2/826:829, 1/2/857:861, 1/2/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_7ACJ_031 | 1/2/933:940, 1/2/1343:1350, 1/2/1372:1384 | No text annotation | ||
| J3_7ACJ_017 | 1/2/941:948, 1/2/1233:1237, 1/2/1337:1342 | No text annotation | ||
| J3_7ACJ_041 | 1/2/941:949, 1/2/1232:1237, 1/2/1337:1342 | No text annotation | ||
| J3_7ACJ_033 | 1/2/953:962, 1/2/973:984, 1/2/1221:1228 | No text annotation | ||
| J3_7ACJ_018 | 1/2/955:962, 1/2/973:984, 1/2/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_7ACJ_019 | 1/2/990:993, 1/2/1045:1047, 1/2/1210:1215 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_7ACJ_034 | 1/2/990:997, 1/2/1044:1047, 1/2/1210:1215 | No text annotation | homologous J3_6CZR_063 NA | |
| J3_7ACJ_020 | 1/2/1003:1006, 1/2/1023:1027, 1/2/1034:1037 | No text annotation | ||
| J3_7ACJ_021 | 1/2/1063:1068, 1/2/1107:1113, 1/2/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_7ACJ_036 | 1/2/1073:1074, 1/2/1083:1086, 1/2/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_7ACJ_023 | 1/2/1116:1118, 1/2/1155:1158, 1/2/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_7ACJ_037 | 1/2/1116:1118, 1/2/1155:1161, 1/2/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_7ACJ_024 | 1/2/1237:1241, 1/2/1296:1308, 1/2/1329:1337 | No text annotation | ||
| J3_7ACJ_025 | 1/3/10:16, 1/3/68:70, 1/3/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J3_7ACJ_038 | 1/4/7:23, 1/4/329:340, 1/4/348:353 | No text annotation | ||
| J4_7ACJ_001 | 1/1/268:269, 1/1/370:375, 1/1/399:406, 1/1/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_7ACJ_002 | 1/1/297:301, 1/1/316:319, 1/1/323:325, 1/1/337:341 | No text annotation | ||
| J4_7ACJ_003 | 1/1/601:604, 1/1/624:628, 1/1/635:638, 1/1/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_7ACJ_004 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_7ACJ_005 | 1/1/1310:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_7ACJ_006 | 1/1/1313:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_7ACJ_007 | 1/1/1444:1445, 1/1/1466:1467, 1/1/1525:1526, 1/1/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_7ACJ_008 | 1/1/1772:1776, 1/1/1788:1792, 1/1/1827:1830, 1/1/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_7ACJ_015 | 1/1/1833:1835, 1/1/1905:1908, 1/1/1922:1933, 1/1/1967:1972 | No text annotation | ||
| J4_7ACJ_010 | 1/1/2285:2289, 1/1/2343:2347, 1/1/2370:2372, 1/1/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_7ACJ_011 | 1/1/2643:2646, 1/1/2674:2676, 1/1/2731:2735, 1/1/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_7ACJ_012 | 1/2/115:122, 1/2/239:240, 1/2/286:289, 1/2/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_7ACJ_013 | 1/2/142:146, 1/2/176:184, 1/2/193:198, 1/2/219:221 | No text annotation | ||
| J4_7ACJ_016 | 1/2/575:577, 1/2/764:769, 1/2/810:821, 1/2/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J5_7ACJ_011 | 1/1/45:46, 1/1/179:183, 1/1/214:235, 1/1/262:266, 1/1/426:433 | No text annotation | ||
| J5_7ACJ_002 | 1/1/47:54, 1/1/116:121, 1/1/130:131, 1/1/148:150, 1/1/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_7ACJ_003 | 1/1/531:533, 1/1/560:564, 1/1/577:579, 1/1/1261:1262, 1/1/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_7ACJ_004 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_7ACJ_005 | 1/1/1674:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_7ACJ_006 | 1/1/2057:2064, 1/1/2446:2453, 1/1/2500:2507, 1/1/2582:2588, 1/1/2606:2611 | No text annotation | ||
| J5_7ACJ_007 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2282, 1/1/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J5_7ACJ_008 | 1/2/36:39, 1/2/403:406, 1/2/436:440, 1/2/497:500, 1/2/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_7ACJ_009 | 1/2/36:39, 1/2/403:406, 1/2/436:442, 1/2/492:500, 1/2/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_7ACJ_010 | 1/2/58:61, 1/2/106:113, 1/2/314:316, 1/2/337:339, 1/2/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J6_7ACJ_001 | 1/4/45:56, 1/4/77:110, 1/4/133:139, 1/4/180:201, 1/4/228:251, 1/4/280:306 | No text annotation | ||
| J7_7ACJ_001 | 1/1/8:15, 1/1/525:531, 1/1/2018:2023, 1/1/2040:2043, 1/1/2625:2630, 1/1/2788:2789, 1/1/2894:2895 | No text annotation | ||
| J7_7ACJ_002 | 1/1/817:822, 1/1/835:838, 1/1/940:946, 1/1/971:976, 1/1/987:991, 1/1/1163:1164, 1/1/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7ACJ_028 | No text annotation | ||
| J3_7ACJ_029 | No text annotation | ||
| J3_7ACJ_012 | No text annotation | ||
| J3_7ACJ_032 | No text annotation | ||
| J3_7ACJ_035 | No text annotation | ||
| J3_7ACJ_022 | No text annotation | ||
| J4_7ACJ_009 | No text annotation | ||
| J4_7ACJ_014 | No text annotation | ||
| J5_7ACJ_001 | No text annotation |
Coloring options: