HL_7ACJ_039

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

7ACJ|1|1|A|1614, 7ACJ|1|1|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ACJ_039 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1191

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

7ACJ|1|1|C|1612
7ACJ|1|1|G|1613
7ACJ|1|1|A|1614
7ACJ|1|1|C|1615
7ACJ|1|1|A|1616
7ACJ|1|1|C|1617
7ACJ|1|1|6MZ|1618
7ACJ|1|1|G|1619

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34