HL_7ACR_098

3D structure

PDB id

7ACR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of post-translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

7ACR|1|2|C|1322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ACR_098 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.4247

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7ACR|1|2|C|1314
7ACR|1|2|U|1315
7ACR|1|2|G|1316
7ACR|1|2|C|1317
7ACR|1|2|A|1318
7ACR|1|2|A|1319
7ACR|1|2|C|1320
7ACR|1|2|U|1321
7ACR|1|2|C|1322
7ACR|1|2|G|1323

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19