HL_7AFD_001

3D structure

PDB id

7AFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GAU(2MG)(5MC)AACGC

Length

10 nucleotides

Bulged bases

7AFD|1|1|A|968, 7AFD|1|1|G|971

QA status

Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFD_001 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.1001

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7AFD|1|1|G|963
7AFD|1|1|A|964
7AFD|1|1|U|965
7AFD|1|1|2MG|966
7AFD|1|1|5MC|967
7AFD|1|1|A|968
7AFD|1|1|A|969
7AFD|1|1|C|970
7AFD|1|1|G|971
7AFD|1|1|C|972

Current chains

Chain 1

16SrRNA of the head domain (residue C931 to G1386)

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13