HL_7AFD_003

3D structure

PDB id

7AFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7AFD|1|1|U|1030, 7AFD|1|1|C|1031

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFD_003 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.2504

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

7AFD|1|1|C|1028
7AFD|1|1|U|1029
7AFD|1|1|U|1030
7AFD|1|1|C|1031
7AFD|1|1|G|1032
7AFD|1|1|G|1033

Current chains

Chain 1

16SrRNA of the head domain (residue C931 to G1386)

Nearby chains