HL_7AFD_004

3D structure

PDB id

7AFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFD_004 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.1673

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7AFD|1|1|U|1076
7AFD|1|1|G|1077
7AFD|1|1|U|1078
7AFD|1|1|G|1079
7AFD|1|1|A|1080
7AFD|1|1|A|1081

Current chains

Chain 1

16SrRNA of the head domain (residue C931 to G1386)

Nearby chains

Chain B

30S ribosomal protein S2