HL_7AFK_007

3D structure

PDB id

7AFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

7AFK|1|1|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFK_007 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.3528

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7AFK|1|1|U|1165
7AFK|1|1|G|1166
7AFK|1|1|A|1167
7AFK|1|1|U|1168
7AFK|1|1|A|1169
7AFK|1|1|A|1170
7AFK|1|1|A|1171

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain B

30S ribosomal protein S2