7AFK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7AFK_001 | 1/1/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_7AFK_002 | 1/1/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_7AFK_003 | 1/1/1028:1033 | UNCG | geometric HL_4LFB_031 HL_34617.5 | |
| HL_7AFK_004 | 1/1/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_7AFK_005 | 1/1/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_7AFK_006 | 1/1/1134:1140 | No text annotation | homologous HL_5J7L_025 HL_87954.2 | |
| HL_7AFK_007 | 1/1/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_7AFK_008 | 1/1/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_7AFK_009 | 1/1/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_7AFK_010 | 1/1/1356:1366 | No text annotation | homologous HL_5J7L_029 HL_06226.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7AFK_016 | 1/1/933:935, 1/1/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_7AFK_002 | 1/1/953:955, 1/1/1225:1228 | No text annotation | ||
| IL_7AFK_003 | 1/1/993:997, 1/1/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
| IL_7AFK_004 | 1/1/998:999, 1/1/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_7AFK_006 | 1/1/1052:1056, 1/1/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_7AFK_007 | 1/1/1057:1058, 1/1/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_7AFK_008 | 1/1/1060:1061, 1/1/1195:1197 | Single bulged A | homologous IL_5J7L_049 IL_31462.6 | |
| IL_7AFK_009 | 1/1/1061:1063, 1/1/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4KNQ_001 IL_28037.2 | |
| IL_7AFK_010 | 1/1/1124:1128, 1/1/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_7AFK_011 | 1/1/1129:1132, 1/1/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_7AFK_012 | 1/1/1247:1253, 1/1/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_7AFK_013 | 1/1/1255:1258, 1/1/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_7AFK_014 | 1/1/1259:1263, 1/1/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_7AFK_015 | 1/1/1303:1308, 1/1/1329:1334 | No text annotation | geometric IL_5J7L_057 IL_85536.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7AFK_001 | No text annotation | ||
| IL_7AFK_017 | Isolated cWH basepair | ||
| IL_7AFK_005 | Self complementary | ||
| IL_7AFK_018 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7AFK_013 | 1/1/936:939, 1/1/1344:1350, 1/1/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_7AFK_002 | 1/1/943:946, 1/1/1235:1237, 1/1/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_7AFK_010 | 1/1/953:962, 1/1/973:984, 1/1/1221:1228 | No text annotation | ||
| J3_7AFK_003 | 1/1/955:962, 1/1/973:984, 1/1/1221:1225 | No text annotation | geometric J3_5J7L_006 J3_83516.4 | |
| J3_7AFK_004 | 1/1/990:993, 1/1/1045:1050, 1/1/1208:1215 | No text annotation | ||
| J3_7AFK_011 | 1/1/990:997, 1/1/1044:1050, 1/1/1208:1215 | No text annotation | ||
| J3_7AFK_005 | 1/1/1003:1006, 1/1/1023:1027, 1/1/1034:1037 | No text annotation | ||
| J3_7AFK_006 | 1/1/1063:1068, 1/1/1107:1113, 1/1/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_7AFK_007 | 1/1/1073:1074, 1/1/1083:1086, 1/1/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_7AFK_008 | 1/1/1116:1118, 1/1/1155:1161, 1/1/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_7AFK_009 | 1/1/1237:1241, 1/1/1296:1303, 1/1/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7AFK_001 | No text annotation | ||
| J3_7AFK_012 | No text annotation |
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