7AFK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7AFK_001 | 1/1/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_7AFK_009 | 1/1/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_7AFK_010 | 1/1/1356:1366 | No text annotation | homologous HL_5J7L_029 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7AFK_002 | GNRA | ||
| HL_7AFK_003 | UNCG | ||
| HL_7AFK_004 | GNRA | ||
| HL_7AFK_005 | T-loop related | ||
| HL_7AFK_006 | No text annotation | ||
| HL_7AFK_007 | GNRA | ||
| HL_7AFK_008 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7AFK_006 | 1/1/1052:1056, 1/1/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_7AFK_007 | 1/1/1057:1058, 1/1/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_7AFK_010 | 1/1/1124:1128, 1/1/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_7AFK_011 | 1/1/1129:1132, 1/1/1142:1143 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_7AFK_012 | 1/1/1247:1253, 1/1/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_7AFK_013 | 1/1/1255:1258, 1/1/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7AFK_016 | Minor groove platform | ||
| IL_7AFK_001 | No text annotation | ||
| IL_7AFK_002 | No text annotation | ||
| IL_7AFK_003 | Minor groove platform | ||
| IL_7AFK_004 | Single stack bend | ||
| IL_7AFK_017 | Isolated cWH basepair | ||
| IL_7AFK_005 | Self complementary | ||
| IL_7AFK_008 | Single bulged A | ||
| IL_7AFK_009 | Isolated non-canonical cWW pair | ||
| IL_7AFK_014 | Double sheared with non-canonical cWW | ||
| IL_7AFK_015 | No text annotation | ||
| IL_7AFK_018 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7AFK_013 | 1/1/936:939, 1/1/1344:1350, 1/1/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_7AFK_002 | 1/1/943:946, 1/1/1235:1237, 1/1/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_7AFK_010 | 1/1/953:962, 1/1/973:984, 1/1/1221:1228 | No text annotation | ||
| J3_7AFK_003 | 1/1/955:962, 1/1/973:984, 1/1/1221:1225 | No text annotation | geometric J3_5J7L_006 NA | |
| J3_7AFK_004 | 1/1/990:993, 1/1/1045:1050, 1/1/1208:1215 | No text annotation | ||
| J3_7AFK_011 | 1/1/990:997, 1/1/1044:1050, 1/1/1208:1215 | No text annotation | ||
| J3_7AFK_006 | 1/1/1063:1068, 1/1/1107:1113, 1/1/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_7AFK_008 | 1/1/1116:1118, 1/1/1155:1161, 1/1/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_7AFK_009 | 1/1/1237:1241, 1/1/1296:1303, 1/1/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7AFK_001 | No text annotation | ||
| J3_7AFK_012 | No text annotation | ||
| J3_7AFK_005 | No text annotation | ||
| J3_7AFK_007 | No text annotation |
Coloring options: