HL_7AFL_008

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFL_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.154

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7AFL|1|A|A|320
7AFL|1|A|A|321
7AFL|1|A|C|322
7AFL|1|A|U|323
7AFL|1|A|G|324
7AFL|1|A|A|325
7AFL|1|A|G|326
7AFL|1|A|A|327
7AFL|1|A|C|328
7AFL|1|A|A|329
7AFL|1|A|C|330
7AFL|1|A|G|331
7AFL|1|A|G|332
7AFL|1|A|U|333

Current chains

Chain A

16SrRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20