HL_7AFL_024

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCGAAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFL_024 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.3246

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

7AFL|1|A|G|725
7AFL|1|A|C|726
7AFL|1|A|G|727
7AFL|1|A|A|728
7AFL|1|A|A|729
7AFL|1|A|G|730
7AFL|1|A|G|731
7AFL|1|A|C|732

Current chains

Chain A

16SrRNA

Nearby chains

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18