3D structure

PDB id
7AFN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state B (head domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.86 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
7AFN|1|1|U|1030
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7AFN_003 not in the Motif Atlas
Geometric match to HL_3U4M_001
Geometric discrepancy: 0.2375
The information below is about HL_3U4M_001
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_61337.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
49

Unit IDs

7AFN|1|1|C|1028
7AFN|1|1|U|1029
7AFN|1|1|U|1030
7AFN|1|1|C|1031
7AFN|1|1|G|1032
7AFN|1|1|G|1033

Current chains

Chain 1
16SrRNA (head domain of the 30S ribosome)

Nearby chains

No other chains within 10Å

Coloring options:


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