Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7AFN_0011/1/963:972No text annotation
homologous
HL_5J7L_021
NA
HL_7AFN_0021/1/1012:1017GNRA
homologous
HL_4LFB_022
HL_34789.1
HL_7AFN_0051/1/1089:1096T-loop related
homologous
HL_5J7L_024
NA
HL_7AFN_0061/1/1134:1140No text annotation
homologous
HL_5J7L_025
NA
HL_7AFN_0081/1/1265:1270GNRA
homologous
HL_5J7L_027
NA
HL_7AFN_0091/1/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
NA
HL_7AFN_0101/1/1356:1366No text annotation
homologous
HL_5J7L_029
NA

Problematic loops

#loop idProblemSequence
HL_7AFN_003UNCG
HL_7AFN_004GNRA
HL_7AFN_007GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7AFN_0011/1/933:935,
1/1/1380:1384
Minor groove platform
homologous
IL_5J7L_041
NA
IL_7AFN_0021/1/953:954,
1/1/1226:1228
Minor groove platform
homologous
IL_5J7L_042
NA
IL_7AFN_0031/1/993:997,
1/1/1044:1045
Minor groove platform
homologous
IL_5J7L_043
NA
IL_7AFN_0061/1/1048:1050,
1/1/1208:1209
Single bulged U
geometric
IL_5J7L_046
NA
IL_7AFN_0081/1/1052:1056,
1/1/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_7AFN_0091/1/1057:1058,
1/1/1199:1203
Minor groove platform
homologous
IL_5J7L_048
NA
IL_7AFN_0101/1/1060:1061,
1/1/1195:1197
Single bulged A
homologous
IL_5J7L_049
NA
IL_7AFN_0111/1/1061:1063,
1/1/1193:1195
Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.1
IL_7AFN_0121/1/1124:1128,
1/1/1144:1149
No text annotation
homologous
IL_5J7L_051
NA
IL_7AFN_0141/1/1158:1161,
1/1/1175:1181
No text annotation
geometric
IL_5J7L_053
NA
IL_7AFN_0151/1/1247:1253,
1/1/1284:1290
No text annotation
homologous
IL_5J7L_054
NA
IL_7AFN_0161/1/1255:1258,
1/1/1277:1282
180 degree turn
homologous
IL_5J7L_055
NA
IL_7AFN_0171/1/1259:1263,
1/1/1272:1276
Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_7AFN_0181/1/1303:1308,
1/1/1329:1334
No text annotation
geometric
IL_5J7L_057
NA

Problematic loops

#loop idProblemSequence
IL_7AFN_004Single stack bend
IL_7AFN_005Isolated non-canonical cWW pair
IL_7AFN_007Isolated non-canonical cWW pair
IL_7AFN_013Minor groove platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7AFN_0091/1/936:939,
1/1/1344:1350,
1/1/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_7AFN_0011/1/943:946,
1/1/1235:1237,
1/1/1337:1340
No text annotation
homologous
J3_5J7L_005
NA
J3_7AFN_0021/1/955:962,
1/1/973:984,
1/1/1221:1225
No text annotation
homologous
J3_5J7L_006
NA
J3_7AFN_0031/1/990:993,
1/1/1045:1048,
1/1/1209:1215
No text annotation
J3_7AFN_0101/1/990:993,
1/1/1045:1050,
1/1/1208:1215
No text annotation
J3_7AFN_0111/1/990:997,
1/1/1044:1050,
1/1/1208:1215
No text annotation
J3_7AFN_0041/1/1003:1006,
1/1/1023:1027,
1/1/1034:1037
No text annotation
J3_7AFN_0051/1/1063:1068,
1/1/1107:1113,
1/1/1187:1193
No text annotation
homologous
J3_5J7L_008
NA
J3_7AFN_0131/1/1073:1074,
1/1/1083:1086,
1/1/1099:1102
No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_7AFN_0071/1/1116:1118,
1/1/1155:1158,
1/1/1181:1184
No text annotation
homologous
J3_5J7L_010
NA
J3_7AFN_0121/1/1116:1118,
1/1/1155:1161,
1/1/1175:1184
No text annotation
homologous
J3_6CZR_025
NA
J3_7AFN_0081/1/1237:1241,
1/1/1296:1303,
1/1/1334:1337
No text annotation
homologous
J3_5J7L_011
NA

Problematic loops

#loop idProblemSequence
J3_7AFN_006No text annotation

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