HL_7AFO_008

3D structure

PDB id

7AFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFO_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1237

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7AFO|1|A|A|320
7AFO|1|A|A|321
7AFO|1|A|C|322
7AFO|1|A|U|323
7AFO|1|A|G|324
7AFO|1|A|A|325
7AFO|1|A|G|326
7AFO|1|A|A|327
7AFO|1|A|C|328
7AFO|1|A|A|329
7AFO|1|A|C|330
7AFO|1|A|G|331
7AFO|1|A|G|332
7AFO|1|A|U|333

Current chains

Chain A

16SrRNA (body domain of the 30S ribosome)

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20