HL_7AFO_021

3D structure

PDB id

7AFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

G(2MG)G(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

7AFO|1|A|G|1517

QA status

Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AFO_021 not in the Motif Atlas

Homologous match to HL_5J7L_031

Geometric discrepancy: 0.3734

The information below is about HL_5J7L_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7AFO|1|A|G|1515
7AFO|1|A|2MG|1516
7AFO|1|A|G|1517
7AFO|1|A|MA6|1518
7AFO|1|A|MA6|1519
7AFO|1|A|C|1520

Current chains

Chain A

16SrRNA (body domain of the 30S ribosome)

Nearby chains

Chain Y

Ribosomal RNA small subunit methyltransferase A