HL_7AJT_007

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJT_007 not in the Motif Atlas

Geometric match to HL_4V9F_070

Geometric discrepancy: 0.1333

The information below is about HL_4V9F_070

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7AJT|1|D2|C|360
7AJT|1|D2|G|361
7AJT|1|D2|C|362
7AJT|1|D2|A|363
7AJT|1|D2|A|364
7AJT|1|D2|G|365

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain UG

U3 small nucleolar RNA-associated protein 7