RNA 3D Hub //

7AJT Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7AJT_0051/D2/251:257Mini UNCG
geometric
HL_1ZBH_001
HL_12626.2
HL_7AJT_0061/D2/301:305Mini UNCG
geometric
HL_5F9R_002
NA
HL_7AJT_0091/D3/70:81No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_7AJT_0171/D3/394:403No text annotation
HL_7AJT_0191/D3/450:456No text annotation
homologous
HL_4V88_197
NA
HL_7AJT_0201/D3/491:496No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_7AJT_0211/D3/520:532No text annotation
homologous
HL_4V88_199
NA
HL_7AJT_0441/D3/561:566No text annotation
HL_7AJT_0241/D3/764:772No text annotation
HL_7AJT_0271/D3/900:909No text annotation
homologous
HL_4V88_206
NA
HL_7AJT_0281/D3/937:942GNRA
geometric
HL_4V88_207
NA
HL_7AJT_0291/D3/1055:1064Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_7AJT_0301/D3/1129:1139No text annotation
HL_7AJT_0341/D3/1594:1602No text annotation
HL_7AJT_0351/D3/1629:1636No text annotation

Problematic loops

#loop idProblemSequence
HL_7AJT_001UNCG variation
HL_7AJT_002No text annotation
HL_7AJT_003UNCG variation
HL_7AJT_004GNRA
HL_7AJT_007GNRA
HL_7AJT_008No text annotation
HL_7AJT_010GNRA related
HL_7AJT_011No text annotation
HL_7AJT_012No text annotation
HL_7AJT_013T-loop with 1 bulged base
HL_7AJT_014UNCG variation
HL_7AJT_015GNRA related
HL_7AJT_016No text annotation
HL_7AJT_018UNCG
HL_7AJT_042No text annotation
HL_7AJT_022No text annotation
HL_7AJT_023No text annotation
HL_7AJT_025No text annotation
HL_7AJT_043No text annotation
HL_7AJT_026No text annotation
HL_7AJT_031No text annotation
HL_7AJT_032No text annotation
HL_7AJT_033GNRA
HL_7AJT_036GNRA
HL_7AJT_037No text annotation
HL_7AJT_038No text annotation
HL_7AJT_039No text annotation
HL_7AJT_040No text annotation
HL_7AJT_041No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7AJT_0011/D2/17:18,
1/D2/62:64		Single bulged G
geometric
IL_5TBW_037
NA
IL_7AJT_0021/D2/94:95,
1/D2/149:156		Multiple bulged bases
geometric
IL_1R3E_001
IL_05670.1
IL_7AJT_0031/D2/97:99,
1/D2/145:147		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_7AJT_0041/D2/100:104,
1/D2/140:144		No text annotation
IL_7AJT_0071/D2/167:171,
1/D2/225:228		No text annotation
IL_7AJT_0101/D2/238:241,
1/D2/272:274		No text annotation
IL_7AJT_1041/D2/245:247,
1/D2/265:268		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.3
IL_7AJT_0121/D2/250:251,
1/D2/257:262		Multiple bulged bases
geometric
IL_6JXM_001
IL_05670.1
IL_7AJT_0131/D2/337:340,
1/D2/386:387		Major groove platform with intercalation
geometric
IL_7A0S_091
IL_94991.2
IL_7AJT_0141/D2/340:341,
1/D2/384:386		Single bulged A
geometric
IL_5J7L_302
NA
IL_7AJT_1051/D2/342:343,
1/D2/381:383		Single bulged U
geometric
IL_7KVT_002
IL_97561.3
IL_7AJT_1061/D2/346:349,
1/D2/375:378		Tandem non-canonical cWW pairs
geometric
IL_4UYK_003
IL_71194.2
IL_7AJT_0171/D2/352:355,
1/D2/371:372		No text annotation
IL_7AJT_0911/D2/352:356,
1/D2/369:372		No text annotation
IL_7AJT_0181/D2/355:356,
1/D2/369:371		Stack outside cWW
geometric
IL_4KZD_006
IL_77710.1
IL_7AJT_0191/D2/402:408,
1/D2/448:455		No text annotation
IL_7AJT_0201/D2/413:414,
1/D2/441:443		Single stack bend
geometric
IL_7KGA_003
IL_15011.2
IL_7AJT_0211/D2/414:415,
1/D2/439:441		Single bulged U
geometric
IL_3WBM_001
IL_97561.3
IL_7AJT_1071/D2/466:470,
1/D4/48:50		No text annotation
geometric
IL_4V9F_053
IL_49140.1
IL_7AJT_0241/D3/23:26,
1/D3/600:602		Isolated non-canonical cWW pair
geometric
IL_5Y85_006
IL_01003.3
IL_7AJT_0251/D3/37:41,
1/D3/466:471		Triple sheared related
geometric
IL_4V88_386
NA
IL_7AJT_1081/D3/50:52,
1/D3/428:429		Minor groove platform
homologous
IL_8CRE_394
IL_34520.3
IL_7AJT_0271/D3/58:63,
1/D3/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_7AJT_0281/D3/64:69,
1/D3/82:86		No text annotation
homologous
IL_4V88_390
NA
IL_7AJT_0301/D3/113:116,
1/D3/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_7AJT_0311/D3/117:122,
1/D3/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_7AJT_0361/D3/265:267,
1/D3/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_7AJT_0431/D3/439:441,
1/D3/463:464		Single bulged U
homologous
IL_4V88_407
NA
IL_7AJT_0441/D3/443:448,
1/D3/458:461		C-loop with extra cWW pair
homologous
IL_4V88_408
NA
IL_7AJT_0451/D3/481:487,
1/D3/500:507		No text annotation
IL_7AJT_0461/D3/514:516,
1/D3/536:543		Isolated tHS basepair with bulges
geometric
IL_7RQB_082
NA
IL_7AJT_0471/D3/517:518,
1/D3/533:535		Minor groove platform
geometric
IL_4V88_388
NA
IL_7AJT_0481/D3/518:520,
1/D3/532:533		Minor groove platform
geometric
IL_4V88_412
NA
IL_7AJT_1101/D3/551:559,
1/D3/568:587		No text annotation
IL_7AJT_0501/D3/627:631,
1/D3/968:972		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_7AJT_0521/D3/745:747,
1/D3/802:806		No text annotation
IL_7AJT_1111/D3/865:866,
1/D3/962:965		Major groove platform; stack outside cWW
homologous
IL_8P9A_417
IL_74641.2
IL_7AJT_0551/D3/867:870,
1/D3/957:961		Tandem non-canonical cWW pairs
geometric
IL_4V88_429
NA
IL_7AJT_1121/D3/868:878,
1/D3/950:960		No text annotation
IL_7AJT_0561/D3/870:874,
1/D3/953:957		No text annotation
geometric
IL_5TBW_121
NA
IL_7AJT_0571/D3/874:878,
1/D3/950:953		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7AJT_0581/D3/885:889,
1/D3/923:927		No text annotation
geometric
IL_5TBW_121
NA
IL_7AJT_0591/D3/893:899,
1/D3/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_7AJT_0601/D3/1035:1040,
1/D3/1078:1082		No text annotation
geometric
IL_4V88_422
NA
IL_7AJT_1131/D3/1040:1044,
1/D3/1074:1078		Partly complementary
geometric
IL_8D29_010
IL_71154.3
IL_7AJT_0621/D3/1051:1053,
1/D3/1066:1067		Single stack bend
geometric
IL_4C7O_002
IL_15011.2
IL_7AJT_0631/D3/1117:1119,
1/D4/6:7		No text annotation
IL_7AJT_0641/D3/1122:1123,
1/D4/1:3		Single stack bend
geometric
IL_8CRE_004
NA
IL_7AJT_0991/D3/1150:1151,
1/D3/1627:1640		No text annotation
IL_7AJT_0651/D3/1173:1176,
1/D3/1463:1466		Double sheared
geometric
IL_4ZNP_002
IL_58355.2
IL_7AJT_1141/D3/1495:1498,
1/D3/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_8P9A_450
IL_76776.1
IL_7AJT_0711/D3/1649:1652,
1/D3/1748:1751		Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_7AJT_1001/D3/1650:1656,
1/D3/1744:1750		No text annotation
IL_7AJT_0721/D3/1652:1656,
1/D3/1744:1748		No text annotation
geometric
IL_5TBW_121
NA
IL_7AJT_0811/D4/77:85,
1/D4/325:330		No text annotation
IL_7AJT_1021/D4/77:96,
1/D4/320:330		No text annotation
IL_7AJT_0821/D4/97:98,
1/D4/317:319		No text annotation
IL_7AJT_0831/D4/111:115,
1/D4/252:259		No text annotation

Problematic loops

#loop idProblemSequence
IL_7AJT_088Isolated non-canonical cWW pair
IL_7AJT_005Single stack bend
IL_7AJT_006Single bulged U
IL_7AJT_008Isolated non-canonical cWW pair
IL_7AJT_009Isolated non-canonical cWW pair
IL_7AJT_011Tandem non-canonical cWW pairs
IL_7AJT_015Isolated non-canonical cWW pair
IL_7AJT_089Tandem non-canonical cWW pairs
IL_7AJT_016No text annotation
IL_7AJT_090No text annotation
IL_7AJT_022No text annotation
IL_7AJT_023No text annotation
IL_7AJT_026No text annotation
IL_7AJT_029No text annotation
IL_7AJT_109Tandem non-canonical cWW pairs
IL_7AJT_032tWH-tWH-tHW-tHW
IL_7AJT_092tWH-tWH-tHW-tHW
IL_7AJT_033Isolated non-canonical cWW contact
IL_7AJT_034Double sheared
IL_7AJT_035Isolated non-canonical cWW pair
IL_7AJT_037No text annotation
IL_7AJT_038Kink-turn with non-sequential stacking
IL_7AJT_039No text annotation
IL_7AJT_093No text annotation
IL_7AJT_040No text annotation
IL_7AJT_041Isolated cWH basepair
IL_7AJT_094Isolated non-canonical cWW pair
IL_7AJT_042Tandem non-canonical cWW pairs
IL_7AJT_095No text annotation
IL_7AJT_049No text annotation
IL_7AJT_051Isolated non-canonical cWW pair
IL_7AJT_053Isolated non-canonical cWW pair
IL_7AJT_054No text annotation
IL_7AJT_096No text annotation
IL_7AJT_061No text annotation
IL_7AJT_097No text annotation
IL_7AJT_098Isolated non-canonical cWW pair
IL_7AJT_066Isolated non-canonical cWW pair
IL_7AJT_067No text annotation
IL_7AJT_068Double sheared
IL_7AJT_069No text annotation
IL_7AJT_070No text annotation
IL_7AJT_101Single bulged U
IL_7AJT_073Isolated cWS basepair
IL_7AJT_074Isolated non-canonical cWW pair
IL_7AJT_075Double sheared
IL_7AJT_076Isolated non-canonical cWW pair
IL_7AJT_077Tandem non-canonical cWW pairs
IL_7AJT_078No text annotation
IL_7AJT_079No text annotation
IL_7AJT_080No text annotation
IL_7AJT_103No text annotation
IL_7AJT_084No text annotation
IL_7AJT_085No text annotation
IL_7AJT_086No text annotation
IL_7AJT_087No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7AJT_0011/D3/41:48,
1/D3/431:439,
1/D3/464:466		No text annotation
J3_7AJT_0091/D3/633:635,
1/D3/861:865,
1/D3/965:966		No text annotation
homologous
J3_8P9A_071
J3_01633.1
J3_7AJT_0031/D3/881:885,
1/D3/927:937,
1/D3/942:947		No text annotation
homologous
J3_8C3A_036
NA
J3_7AJT_0101/D3/881:889,
1/D3/923:937,
1/D3/942:947		No text annotation
J3_7AJT_0041/D3/1150:1151,
1/D3/1627:1629,
1/D3/1636:1640		No text annotation
J3_7AJT_0051/D3/1167:1171,
1/D3/1468:1470,
1/D3/1574:1578		No text annotation
J4_7AJT_0031/D3/1157:1171,
1/D3/1468:1470,
1/D3/1574:1589,
1/D3/1607:1621		No text annotation
J5_7AJT_0041/D2/291:299,
1/D2/307:333,
1/D2/391:399,
1/D2/458:462,
1/D4/54:62		No text annotation
J5_7AJT_0051/D3/31:37,
1/D3/471:479,
1/D3/509:516,
1/D3/536:547,
1/D3/591:595		No text annotation
J5_7AJT_0031/D3/54:57,
1/D3/90:97,
1/D3/386:388,
1/D3/409:411,
1/D3/422:426		No text annotation
homologous
J5_8C3A_020
NA

Problematic loops

#loop idProblemSequence
J3_7AJT_002No text annotation
J3_7AJT_008No text annotation
J3_7AJT_006No text annotation
J3_7AJT_007No text annotation
J4_7AJT_001No text annotation
J4_7AJT_002No text annotation
J5_7AJT_001No text annotation
J5_7AJT_002No text annotation

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