HL_7AJT_014

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

7AJT|1|D3|U|277, 7AJT|1|D3|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJT_014 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3424

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7AJT|1|D3|C|275
7AJT|1|D3|C|276
7AJT|1|D3|U|277
7AJT|1|D3|U|278
7AJT|1|D3|G|279
7AJT|1|D3|U|280
7AJT|1|D3|G|281

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A