HL_7AJT_018

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7AJT|1|D3|A|416

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJT_018 not in the Motif Atlas

Geometric match to HL_1UN6_003

Geometric discrepancy: 0.1986

The information below is about HL_1UN6_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7AJT|1|D3|C|414
7AJT|1|D3|C|415
7AJT|1|D3|A|416
7AJT|1|D3|A|417
7AJT|1|D3|G|418
7AJT|1|D3|G|419

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DG

40S ribosomal protein S6-A

Chain JA

RNA cytidine acetyltransferase