HL_7AJT_028

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJT_028 not in the Motif Atlas

Geometric match to HL_4V88_207

Geometric discrepancy: 0.1742

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7AJT|1|D3|C|937
7AJT|1|D3|G|938
7AJT|1|D3|A|939
7AJT|1|D3|A|940
7AJT|1|D3|A|941
7AJT|1|D3|G|942

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DN

40S ribosomal protein S13

Chain DO

40S ribosomal protein S14-A

Chain JO

KRR1 small subunit processome component