HL_7AJT_042

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCCCAUUCGGGU

Length

12 nucleotides

Bulged bases

7AJT|1|D3|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJT|1|D3|G|488
7AJT|1|D3|C|489
7AJT|1|D3|C|490
7AJT|1|D3|C|491
7AJT|1|D3|A|492
7AJT|1|D3|U|493
7AJT|1|D3|U|494
7AJT|1|D3|C|495
7AJT|1|D3|G|496
7AJT|1|D3|G|497
7AJT|1|D3|G|498
7AJT|1|D3|U|499

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CA

rRNA 2'-O-methyltransferase fibrillarin

Chain CL

Ribosome biogenesis protein BMS1

Chain JM

rRNA-processing protein FCF2

Chain UC

Something about silencing protein 10

Chain UX

rRNA-processing protein FCF1