3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CCUUUG
Length
6 nucleotides
Bulged bases
7AJU|1|D3|U|194
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7AJU_006 not in the Motif Atlas
Homologous match to HL_4V88_189
Geometric discrepancy: 0.4699
The information below is about HL_4V88_189
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_22523.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

7AJU|1|D3|C|190
7AJU|1|D3|C|191
7AJU|1|D3|U|192
7AJU|1|D3|U|193
7AJU|1|D3|U|194
7AJU|1|D3|G|195

Current chains

Chain D3
18S rRNA

Nearby chains

Chain UT
U3 small nucleolar RNA-associated protein 20

Coloring options:


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