7AJU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7AJU_001 | 1/D2/4:9 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_7AJU_002 | 1/D2/23:57 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
HL_7AJU_003 | 1/D3/7:17 | No text annotation | homologous HL_4V88_186 NA | |
HL_7AJU_004 | 1/D3/70:81 | No text annotation | homologous HL_4V88_187 NA | |
HL_7AJU_005 | 1/D3/154:160 | GNRA related | homologous HL_4V88_188 NA | |
HL_7AJU_006 | 1/D3/190:195 | No text annotation | homologous HL_4V88_189 NA | |
HL_7AJU_007 | 1/D3/230:235 | No text annotation | homologous HL_4V88_190 NA | |
HL_7AJU_008 | 1/D3/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
HL_7AJU_009 | 1/D3/276:279 | No text annotation | geometric HL_5TBW_068 NA | |
HL_7AJU_010 | 1/D3/330:338 | GNRA related | homologous HL_4V88_193 NA | |
HL_7AJU_040 | 1/D3/368:373 | No text annotation | homologous HL_8P9A_198 HL_93535.1 | |
HL_7AJU_012 | 1/D3/393:404 | No text annotation | homologous HL_4V88_195 NA | |
HL_7AJU_013 | 1/D3/414:419 | UNCG | homologous HL_4V88_196 NA | |
HL_7AJU_014 | 1/D3/450:456 | No text annotation | homologous HL_4V88_197 NA | |
HL_7AJU_015 | 1/D3/491:496 | GNRA | geometric HL_4WF9_031 HL_37824.7 | |
HL_7AJU_038 | 1/D3/517:535 | No text annotation | ||
HL_7AJU_016 | 1/D3/520:532 | No text annotation | geometric HL_4V88_199 NA | |
HL_7AJU_017 | 1/D3/561:566 | No text annotation | geometric HL_5TBW_006 NA | |
HL_7AJU_018 | 1/D3/716:722 | No text annotation | ||
HL_7AJU_019 | 1/D3/764:772 | No text annotation | homologous HL_4V88_203 NA | |
HL_7AJU_020 | 1/D3/777:783 | No text annotation | homologous HL_4V88_204 NA | |
HL_7AJU_022 | 1/D3/900:909 | No text annotation | homologous HL_4V88_206 NA | |
HL_7AJU_023 | 1/D3/937:942 | GNRA | homologous HL_4V88_207 NA | |
HL_7AJU_024 | 1/D3/997:1007 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
HL_7AJU_025 | 1/D3/1055:1064 | No text annotation | geometric HL_4V88_198 NA | |
HL_7AJU_026 | 1/D3/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
HL_7AJU_028 | 1/D3/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
HL_7AJU_039 | 1/D3/1550:1561 | No text annotation | ||
HL_7AJU_029 | 1/D3/1552:1559 | No text annotation | ||
HL_7AJU_030 | 1/D3/1594:1602 | Mini UNCG | geometric HL_4OOG_001 HL_56334.1 | |
HL_7AJU_031 | 1/D3/1629:1636 | No text annotation | geometric HL_4LX6_002 HL_31585.4 | |
HL_7AJU_032 | 1/D3/1698:1703 | GNRA | geometric HL_7RQB_063 NA | |
HL_7AJU_033 | 1/D3/1778:1783 | Mini UNCG | geometric HL_6AAX_001 HL_56334.1 | |
HL_7AJU_034 | 1/D4/153:160 | No text annotation | ||
HL_7AJU_035 | 1/D4/180:185 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7AJU_011 | GNRA with extra cWW | ||
HL_7AJU_021 | No text annotation | ||
HL_7AJU_027 | No text annotation | ||
HL_7AJU_036 | No text annotation | ||
HL_7AJU_037 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7AJU_001 | 1/D2/17:18, 1/D2/62:64 | Single bulged G | geometric IL_5TBW_037 NA | |
IL_7AJU_003 | 1/D2/465:468, 1/D4/50:51 | No text annotation | geometric IL_8P9A_309 IL_73355.1 | |
IL_7AJU_004 | 1/D2/468:470, 1/D4/48:50 | Single stack bend | geometric IL_5TBW_004 NA | |
IL_7AJU_005 | 1/D3/24:26, 1/D3/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
IL_7AJU_006 | 1/D3/35:37, 1/D3/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
IL_7AJU_089 | 1/D3/37:41, 1/D3/466:471 | No text annotation | ||
IL_7AJU_007 | 1/D3/50:52, 1/D3/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
IL_7AJU_008 | 1/D3/58:63, 1/D3/87:89 | No text annotation | homologous IL_4V88_389 NA | |
IL_7AJU_009 | 1/D3/64:69, 1/D3/82:86 | No text annotation | homologous IL_4V88_390 NA | |
IL_7AJU_010 | 1/D3/109:112, 1/D3/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
IL_7AJU_011 | 1/D3/113:116, 1/D3/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
IL_7AJU_012 | 1/D3/117:122, 1/D3/295:299 | No text annotation | homologous IL_4V88_393 NA | |
IL_7AJU_013 | 1/D3/143:149, 1/D3/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
IL_7AJU_014 | 1/D3/150:152, 1/D3/162:164 | Isolated cWH basepair | geometric IL_3CZW_002 NA | |
IL_7AJU_015 | 1/D3/186:189, 1/D3/196:199 | Double sheared | homologous IL_4V88_396 NA | |
IL_7AJU_016 | 1/D3/204:206, 1/D3/259:263 | Isolated non-canonical cWW pair | geometric IL_5B2P_002 IL_07785.1 | |
IL_7AJU_017 | 1/D3/206:208, 1/D3/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
IL_7AJU_018 | 1/D3/265:267, 1/D3/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
IL_7AJU_019 | 1/D3/270:273, 1/D3/283:285 | No text annotation | homologous IL_4V88_400 NA | |
IL_7AJU_020 | 1/D3/275:276, 1/D3/279:281 | Single bulged U | homologous IL_4V88_401 NA | |
IL_7AJU_021 | 1/D3/311:316, 1/D3/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
IL_7AJU_022 | 1/D3/318:323, 1/D3/345:346 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
IL_7AJU_023 | 1/D3/363:365, 1/D3/376:381 | No text annotation | homologous IL_4V88_404 NA | |
IL_7AJU_024 | 1/D3/389:391, 1/D3/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
IL_7AJU_025 | 1/D3/411:413, 1/D3/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
IL_7AJU_026 | 1/D3/439:441, 1/D3/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
IL_7AJU_027 | 1/D3/443:447, 1/D3/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
IL_7AJU_028 | 1/D3/447:448, 1/D3/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
IL_7AJU_081 | 1/D3/482:483, 1/D3/504:506 | Single bulged A | homologous IL_8P9A_399 IL_31462.6 | |
IL_7AJU_030 | 1/D3/516:520, 1/D3/532:536 | Triple sheared | geometric IL_5J7L_338 IL_17948.2 | |
IL_7AJU_031 | 1/D3/551:552, 1/D3/584:587 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
IL_7AJU_032 | 1/D3/552:559, 1/D3/568:584 | No text annotation | ||
IL_7AJU_033 | 1/D3/624:626, 1/D3/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
IL_7AJU_034 | 1/D3/627:631, 1/D3/968:972 | UAA/GAN with extra pair | geometric IL_7RQB_074 NA | |
IL_7AJU_035 | 1/D3/646:648, 1/D3/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
IL_7AJU_036 | 1/D3/648:650, 1/D3/685:686 | Single stack bend | geometric IL_4V9F_005 IL_90729.1 | |
IL_7AJU_037 | 1/D3/650:651, 1/D3/683:685 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
IL_7AJU_038 | 1/D3/652:658, 1/D3/676:682 | No text annotation | ||
IL_7AJU_039 | 1/D3/703:708, 1/D3/730:735 | No text annotation | geometric IL_6O5F_001 NA | |
IL_7AJU_040 | 1/D3/709:712, 1/D3/726:729 | Tandem non-canonical cWW pairs | geometric IL_4K27_002 IL_77658.1 | |
IL_7AJU_041 | 1/D3/746:747, 1/D3/802:805 | Minor groove platform | geometric IL_7RQB_073 NA | |
IL_7AJU_042 | 1/D3/748:750, 1/D3/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
IL_7AJU_043 | 1/D3/751:759, 1/D3/791:798 | No text annotation | homologous IL_8C3A_503 NA | |
IL_7AJU_044 | 1/D3/865:866, 1/D3/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
IL_7AJU_084 | 1/D3/868:869, 1/D3/958:960 | Single bulged U | geometric IL_3NDB_005 IL_89505.4 | |
IL_7AJU_046 | 1/D3/871:874, 1/D3/953:956 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
IL_7AJU_047 | 1/D3/874:878, 1/D3/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
IL_7AJU_048 | 1/D3/885:888, 1/D3/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
IL_7AJU_049 | 1/D3/893:899, 1/D3/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
IL_7AJU_050 | 1/D3/985:990, 1/D3/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
IL_7AJU_051 | 1/D3/990:994, 1/D3/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
IL_7AJU_052 | 1/D3/1034:1036, 1/D3/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
IL_7AJU_053 | 1/D3/1041:1044, 1/D3/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
IL_7AJU_054 | 1/D3/1051:1053, 1/D3/1066:1067 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
IL_7AJU_090 | 1/D3/1117:1119, 1/D4/6:7 | No text annotation | ||
IL_7AJU_056 | 1/D3/1122:1123, 1/D4/1:3 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
IL_7AJU_057 | 1/D3/1157:1160, 1/D3/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
IL_7AJU_058 | 1/D3/1173:1175, 1/D3/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
IL_7AJU_059 | 1/D3/1495:1498, 1/D3/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
IL_7AJU_060 | 1/D3/1540:1545, 1/D3/1566:1571 | No text annotation | homologous IL_4V88_462 NA | |
IL_7AJU_061 | 1/D3/1550:1552, 1/D3/1559:1561 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
IL_7AJU_062 | 1/D3/1650:1652, 1/D3/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
IL_7AJU_064 | 1/D3/1665:1667, 1/D3/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
IL_7AJU_065 | 1/D3/1669:1672, 1/D3/1729:1732 | Double sheared | geometric IL_1SAQ_002 NA | |
IL_7AJU_066 | 1/D3/1672:1674, 1/D3/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
IL_7AJU_067 | 1/D3/1675:1678, 1/D3/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
IL_7AJU_069 | 1/D3/1687:1693, 1/D3/1708:1714 | No text annotation | ||
IL_7AJU_070 | 1/D3/1693:1695, 1/D3/1706:1708 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_87907.2 | |
IL_7AJU_071 | 1/D4/78:85, 1/D4/325:329 | No text annotation | ||
IL_7AJU_087 | 1/D4/85:96, 1/D4/320:325 | No text annotation | ||
IL_7AJU_072 | 1/D4/97:98, 1/D4/317:319 | No text annotation | ||
IL_7AJU_073 | 1/D4/111:115, 1/D4/252:259 | No text annotation | ||
IL_7AJU_074 | 1/D4/139:142, 1/D4/169:171 | No text annotation | ||
IL_7AJU_075 | 1/D4/144:146, 1/D4/166:167 | No text annotation | ||
IL_7AJU_076 | 1/D4/148:150, 1/D4/163:164 | No text annotation | ||
IL_7AJU_077 | 1/D4/177:178, 1/D4/187:189 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7AJU_002 | No text annotation | ||
IL_7AJU_078 | No text annotation | ||
IL_7AJU_079 | No text annotation | ||
IL_7AJU_080 | Tandem non-canonical cWW pairs | ||
IL_7AJU_029 | Isolated cWH basepair | ||
IL_7AJU_082 | No text annotation | ||
IL_7AJU_083 | Tandem non-canonical cWW pairs | ||
IL_7AJU_045 | Tandem non-canonical cWW pairs | ||
IL_7AJU_085 | Triple non-canonical cWW pairs | ||
IL_7AJU_086 | No text annotation | ||
IL_7AJU_055 | Isolated non-canonical cWW pair | ||
IL_7AJU_063 | No text annotation | ||
IL_7AJU_068 | No text annotation | ||
IL_7AJU_088 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7AJU_011 | 1/D3/41:48, 1/D3/431:439, 1/D3/464:466 | No text annotation | ||
J3_7AJU_001 | 1/D3/633:635, 1/D3/861:865, 1/D3/965:966 | No text annotation | homologous J3_8P9A_071 J3_56052.5 | |
J3_7AJU_003 | 1/D3/881:884, 1/D3/928:936, 1/D3/943:947 | No text annotation | homologous J3_4V88_033 NA | |
J3_7AJU_004 | 1/D3/1037:1039, 1/D3/1079:1083, 1/D3/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
J3_7AJU_005 | 1/D3/1150:1151, 1/D3/1627:1629, 1/D3/1636:1640 | No text annotation | ||
J3_7AJU_010 | 1/D3/1161:1164, 1/D3/1581:1587, 1/D3/1609:1616 | No text annotation | homologous J3_8C3A_038 NA | |
J3_7AJU_006 | 1/D3/1168:1171, 1/D3/1468:1470, 1/D3/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
J3_7AJU_007 | 1/D3/1470:1474, 1/D3/1533:1540, 1/D3/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
J4_7AJU_001 | 1/D3/99:107, 1/D3/307:309, 1/D3/357:361, 1/D3/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
J4_7AJU_002 | 1/D3/616:624, 1/D3/975:980, 1/D3/1021:1032, 1/D3/1103:1105 | No text annotation | ||
J5_7AJU_001 | 1/D3/31:35, 1/D3/473:479, 1/D3/509:516, 1/D3/536:546, 1/D3/592:595 | No text annotation | ||
J5_7AJU_002 | 1/D3/54:57, 1/D3/90:97, 1/D3/386:388, 1/D3/409:411, 1/D3/422:426 | No text annotation | homologous J5_8C3A_020 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7AJU_009 | No text annotation | ||
J3_7AJU_002 | No text annotation | ||
J3_7AJU_008 | No text annotation |
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