HL_7AJU_030
3D structure
- PDB id
- 7AJU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 7AJU|1|D3|U|1595, 7AJU|1|D3|C|1596, 7AJU|1|D3|G|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7AJU_030 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.3141
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_56334.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 16
Unit IDs
7AJU|1|D3|G|1594
7AJU|1|D3|U|1595
7AJU|1|D3|C|1596
7AJU|1|D3|A|1597
7AJU|1|D3|U|1598
7AJU|1|D3|C|1599
7AJU|1|D3|A|1600
7AJU|1|D3|G|1601
7AJU|1|D3|C|1602
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CJ
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain CK
- U3 small nucleolar RNA-associated protein MPP10
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DT
- 40S ribosomal protein S19-A
- Chain UB
- Nucleolar complex protein 14
- Chain UK
- U3 small nucleolar RNA-associated protein 11
Coloring options: