HL_7AJU_033

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

7AJU|1|D3|U|1779, 7AJU|1|D3|G|1780, 7AJU|1|D3|A|1782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AJU_033 not in the Motif Atlas

Geometric match to HL_6AAX_001

Geometric discrepancy: 0.3896

The information below is about HL_6AAX_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

7AJU|1|D3|G|1778
7AJU|1|D3|U|1779
7AJU|1|D3|G|1780
7AJU|1|D3|A|1781
7AJU|1|D3|A|1782
7AJU|1|D3|C|1783

Current chains

Chain D3

18S rRNA

Nearby chains

Chain JL

Dimethyladenosine transferase