3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AUUGUAAUUAUU
Length
12 nucleotides
Bulged bases
7AJU|1|D3|U|1557
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7AJU|1|D3|A|1550
7AJU|1|D3|U|1551
7AJU|1|D3|U|1552
7AJU|1|D3|G|1553
7AJU|1|D3|U|1554
7AJU|1|D3|A|1555
7AJU|1|D3|A|1556
7AJU|1|D3|U|1557
7AJU|1|D3|U|1558
7AJU|1|D3|A|1559
7AJU|1|D3|U|1560
7AJU|1|D3|U|1561

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CK
U3 small nucleolar RNA-associated protein MPP10
Chain CL
Ribosome biogenesis protein BMS1
Chain DS
40S ribosomal protein S18-A
Chain UK
U3 small nucleolar RNA-associated protein 11

Coloring options:

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