HL_7AQD_036

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

7AQD|1|A|U|1435, 7AQD|1|A|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AQD_036 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1698

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7AQD|1|A|G|1428
7AQD|1|A|U|1429
7AQD|1|A|U|1430
7AQD|1|A|G|1431
7AQD|1|A|A|1432
7AQD|1|A|U|1433
7AQD|1|A|A|1434
7AQD|1|A|U|1435
7AQD|1|A|U|1436
7AQD|1|A|C|1437

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L23