RNA 3D Hub //

7AQD Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7AQD_0761/A/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_7AQD_0011/A/67:74No text annotation
homologous
HL_4WF9_001
HL_08550.2
HL_7AQD_0021/A/87:95Pseudoknot geometry
homologous
HL_4WF9_002
HL_00911.3
HL_7AQD_0031/A/122:127No text annotation
homologous
HL_4WF9_003
HL_75660.9
HL_7AQD_0041/A/136:143GNRA with tandem sheared
homologous
HL_4WF9_004
HL_98423.4
HL_7AQD_0051/A/159:169No text annotation
homologous
HL_5J7L_138
NA
HL_7AQD_0061/A/197:204No text annotation
geometric
HL_7RQB_006
NA
HL_7AQD_0071/A/228:233No text annotation
homologous
HL_7A0S_007
HL_91813.1
HL_7AQD_0081/A/249:255No text annotation
homologous
HL_4WF9_008
HL_76371.3
HL_7AQD_0101/A/349:356T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_13999.4
HL_7AQD_0111/A/363:367No text annotation
homologous
HL_7RQB_011
NA
HL_7AQD_0121/A/371:379T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_7AQD_0131/A/429:439No text annotation
homologous
HL_5J7L_145
NA
HL_7AQD_0141/A/457:464Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.5
HL_7AQD_0151/A/509:514GNRA
homologous
HL_7RQB_015
NA
HL_7AQD_0161/A/534:539GNRA
homologous
HL_7RQB_016
NA
HL_7AQD_0171/A/588:595No text annotation
homologous
HL_4WF9_017
HL_50318.1
HL_7AQD_0181/A/610:619T-loop with 2 stacked bulged bases
homologous
HL_4WF9_018
HL_33597.4
HL_7AQD_0191/A/656:662GNRA related
geometric
HL_5J7L_179
NA
HL_7AQD_0201/A/675:680GNRA
homologous
HL_5J7L_152
NA
HL_7AQD_0211/A/687:693No text annotation
homologous
HL_7RQB_021
NA
HL_7AQD_0231/A/791:800No text annotation
homologous
HL_4WF9_023
HL_50204.2
HL_7AQD_0241/A/826:832UNCG variation
geometric
HL_1P6V_001
NA
HL_7AQD_0251/A/873:878No text annotation
homologous
HL_7RQB_025
NA
HL_7AQD_0271/A/1001:1008GNRA
homologous
HL_7RQB_027
NA
HL_7AQD_0281/A/1024:1031No text annotation
homologous
HL_5J7L_160
NA
HL_7AQD_0321/A/1262:1267GNRA
homologous
HL_7A0S_031
HL_34789.5
HL_7AQD_0331/A/1320:1328T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_33597.4
HL_7AQD_0341/A/1363:1369No text annotation
homologous
HL_7RQB_034
NA
HL_7AQD_0351/A/1402:1407GNRA
homologous
HL_5J7L_167
NA
HL_7AQD_0361/A/1428:1437No text annotation
homologous
HL_4WF9_035
HL_77449.2
HL_7AQD_0781/A/1494:1509No text annotation
HL_7AQD_0371/A/1497:1505No text annotation
geometric
HL_8VTW_051
NA
HL_7AQD_0381/A/1538:1544Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_7AQD_0401/A/1613:1616Mini UNCG
homologous
HL_5J7L_172
NA
HL_7AQD_0411/A/1657:1664No text annotation
homologous
HL_7RQB_040
NA
HL_7AQD_0421/A/1675:1681GNRA
homologous
HL_5J7L_174
NA
HL_7AQD_0431/A/1736:1741UNCG
geometric
HL_4PMI_004
HL_61337.5
HL_7AQD_0451/A/1781:1785No text annotation
homologous
HL_7RQB_044
NA
HL_7AQD_0461/A/1806:1816No text annotation
homologous
HL_7RQB_045
NA
HL_7AQD_0471/A/1835:1840GNRA
homologous
HL_7RQB_046
NA
HL_7AQD_0501/A/1978:1986No text annotation
homologous
HL_5J7L_182
NA
HL_7AQD_0511/A/2056:2065No text annotation
homologous
HL_4WF9_047
HL_78372.2
HL_7AQD_0531/A/2238:2244No text annotation
homologous
HL_5J7L_185
NA
HL_7AQD_0541/A/2277:2285No text annotation
homologous
HL_5J7L_186
NA
HL_7AQD_0551/A/2293:2305No text annotation
homologous
HL_7RQB_054
NA
HL_7AQD_0571/A/2353:2360Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_7AQD_0581/A/2384:2391GNRA with extra cWW
homologous
HL_4WF9_053
HL_87268.3
HL_7AQD_0591/A/2403:2408GNRA
homologous
HL_5J7L_191
NA
HL_7AQD_0601/A/2433:2442No text annotation
homologous
HL_4WF9_055
HL_51853.2
HL_7AQD_0611/A/2500:2508No text annotation
homologous
HL_4WF9_056
HL_52011.2
HL_7AQD_0621/A/2557:2564GNRA variation
homologous
HL_5J7L_194
NA
HL_7AQD_0631/A/2580:2586LSU A loop
homologous
HL_4WF9_058
HL_48677.2
HL_7AQD_0641/A/2623:2628GNRA
homologous
HL_7RQB_063
NA
HL_7AQD_0651/A/2687:2692GNRA
homologous
HL_7A0S_063
HL_34789.5
HL_7AQD_0661/A/2730:2735Ribsomal LSU H95
homologous
HL_4WF9_061
HL_12125.3
HL_7AQD_0671/A/2774:2788No text annotation
homologous
HL_4WF9_062
HL_53269.3
HL_7AQD_0691/A/2844:2852No text annotation
homologous
HL_5J7L_201
NA
HL_7AQD_0701/A/2881:2886GNRA
homologous
HL_7A0S_068
HL_34789.5
HL_7AQD_0721/B/84:88Mini UNCG
homologous
HL_5J7L_204
NA

Problematic loops

#loop idProblemSequence
HL_7AQD_077No text annotation
HL_7AQD_009No text annotation
HL_7AQD_022GNRA with tandem sheared
HL_7AQD_026No text annotation
HL_7AQD_029No text annotation
HL_7AQD_030GNRA with tandem sheared
HL_7AQD_031Mini UNCG
HL_7AQD_039No text annotation
HL_7AQD_044No text annotation
HL_7AQD_048No text annotation
HL_7AQD_049No text annotation
HL_7AQD_052No text annotation
HL_7AQD_056No text annotation
HL_7AQD_079No text annotation
HL_7AQD_068No text annotation
HL_7AQD_071No text annotation
HL_7AQD_073No text annotation
HL_7AQD_074tRNA anticodon loop with synthetase
HL_7AQD_075No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7AQD_0011/A/24:30,
1/A/556:562		Triple sheared with non-canonical cWW
homologous
IL_4WF9_001
IL_22311.2
IL_7AQD_0021/A/36:37,
1/A/489:491		Single bulged A
homologous
IL_7RQB_002
NA
IL_7AQD_0031/A/43:44,
1/A/481:483		Minor groove platform
homologous
IL_5J7L_247
NA
IL_7AQD_0041/A/81:85,
1/A/97:104		Kink-turn
homologous
IL_7RQB_004
NA
IL_7AQD_0051/A/152:153,
1/A/175:177		Single bulged A
homologous
IL_4WF9_006
IL_14190.3
IL_7AQD_0061/A/186:187,
1/A/215:217		Single stack bend
homologous
IL_7A0S_005
IL_15011.4
IL_7AQD_0071/A/191:197,
1/A/204:211		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_006
IL_62167.4
IL_7AQD_0081/A/241:248,
1/A/256:262		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_009
IL_62167.4
IL_7AQD_0111/A/319:327,
1/A/400:401		No text annotation
IL_7AQD_0121/A/336:338,
1/A/387:391		No text annotation
homologous
IL_5J7L_254
NA
IL_7AQD_0131/A/344:346,
1/A/359:360		Single bulged A
geometric
IL_1U63_004
IL_14190.3
IL_7AQD_0141/A/528:531,
1/A/542:555		No text annotation
homologous
IL_4WF9_015
IL_44923.2
IL_7AQD_0151/A/582:585,
1/A/598:601		Double sheared
homologous
IL_4WF9_016
IL_58355.3
IL_7AQD_0161/A/608:610,
1/A/619:621		Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_71625.4
IL_7AQD_0171/A/639:641,
1/A/707:709		Isolated non-canonical cWW pair
homologous
IL_4WF9_018
IL_71625.4
IL_7AQD_0181/A/650:654,
1/A/664:668		AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_7AQD_0191/A/719:721,
1/A/853:855		No text annotation
geometric
IL_7RQB_017
NA
IL_7AQD_0201/A/721:725,
1/A/846:853		tHW-tHW cross-strand stack
homologous
IL_7RQB_018
NA
IL_7AQD_0211/A/744:745,
1/A/810:812		Single bulged A
geometric
IL_4V9F_025
IL_14190.3
IL_7AQD_0221/A/749:750,
1/A/775:777		Single bulged G
homologous
IL_7RQB_020
NA
IL_7AQD_0231/A/750:754,
1/A/771:775		Triple sheared
geometric
IL_5J7L_310
NA
IL_7AQD_0241/A/785:787,
1/A/804:805		Major groove platform
homologous
IL_4WF9_026
IL_48076.9
IL_7AQD_0251/A/822:824,
1/A/834:838		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_7AQD_0261/A/884:885,
1/A/986:988		Single stack bend
homologous
IL_7A0S_022
IL_15011.4
IL_7AQD_0271/A/891:895,
1/A/977:980		No text annotation
homologous
IL_4WF9_029
IL_01742.1
IL_7AQD_0281/A/899:900,
1/A/971:973		Single stack bend
geometric
IL_4V9F_081
IL_15011.4
IL_7AQD_0291/A/903:909,
1/A/962:968		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4WF9_031
IL_94128.2
IL_7AQD_0301/A/909:910,
1/A/960:962		Minor groove platform
homologous
IL_7A0S_028
IL_34520.4
IL_7AQD_0311/A/911:915,
1/A/956:959		C-loop
homologous
IL_7A0S_029
IL_16301.2
IL_7AQD_0341/A/998:1000,
1/A/1009:1011		Isolated non-canonical cWW pair
homologous
IL_7A0S_031
IL_01003.5
IL_7AQD_0351/A/1040:1042,
1/A/1205:1206		Single bulged C
homologous
IL_4WF9_035
IL_05642.4
IL_7AQD_0361/A/1044:1048,
1/A/1199:1203		UAA/GAN
homologous
IL_5J7L_277
NA
IL_7AQD_0371/A/1050:1057,
1/A/1196:1197		SSU/LSU pseudoknot
homologous
IL_5J7L_278
NA
IL_7AQD_0381/A/1057:1059,
1/A/1195:1196		Single bulged U
geometric
IL_5J7L_279
NA
IL_7AQD_0391/A/1064:1070,
1/A/1186:1190		Kink-turn related
geometric
IL_4WF9_039
IL_57188.6
IL_7AQD_0401/A/1070:1076,
1/A/1170:1186		No text annotation
geometric
IL_5J7L_281
NA
IL_7AQD_0411/A/1077:1080,
1/A/1167:1169		Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_7AQD_1231/A/1238:1239,
1/A/1287:1289		No text annotation
IL_7AQD_0461/A/1243:1247,
1/A/1279:1283		No text annotation
geometric
IL_5TBW_121
NA
IL_7AQD_0471/A/1248:1255,
1/A/1274:1278		Kink-turn
homologous
IL_7A0S_043
IL_90775.2
IL_7AQD_0481/A/1259:1261,
1/A/1268:1270		Intercalated cWW
homologous
IL_4WF9_047
IL_53541.1
IL_7AQD_0491/A/1302:1309,
1/A/2040:2046		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_048
IL_62167.4
IL_7AQD_0501/A/1349:1352,
1/A/1648:1649		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_7AQD_0511/A/1358:1362,
1/A/1370:1372		C-loop
homologous
IL_7A0S_047
IL_06671.2
IL_7AQD_0521/A/1390:1394,
1/A/1415:1419		UAA/GAN
homologous
IL_7A0S_048
IL_89021.4
IL_7AQD_0531/A/1396:1400,
1/A/1409:1413		tSH-tWH-tHS
homologous
IL_5J7L_293
NA
IL_7AQD_0541/A/1448:1450,
1/A/1637:1638		Minor groove platform
geometric
IL_4R4V_001
IL_34520.4
IL_7AQD_0561/A/1463:1467,
1/A/1625:1628		Other IL
homologous
IL_4WF9_054
IL_74317.1
IL_7AQD_0571/A/1478:1481,
1/A/1605:1609		No text annotation
IL_7AQD_0581/A/1483:1486,
1/A/1599:1603		tSH-tHW
homologous
IL_5J7L_297
NA
IL_7AQD_0591/A/1488:1490,
1/A/1595:1597		Isolated non-canonical cWW pair
geometric
IL_5MWI_006
NA
IL_7AQD_0601/A/1494:1496,
1/A/1507:1509		Isolated non-canonical cWW pair
geometric
IL_4ZC7_004
IL_01003.5
IL_7AQD_0611/A/1496:1497,
1/A/1505:1507		Single bulged A
geometric
IL_7RQB_059
NA
IL_7AQD_0621/A/1514:1517,
1/A/1567:1571		No text annotation
IL_7AQD_0631/A/1517:1524,
1/A/1560:1567		No text annotation
IL_7AQD_1241/A/1531:1537,
1/A/1545:1550		No text annotation
IL_7AQD_0651/A/1534:1537,
1/A/1545:1547		Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
IL_68118.5
IL_7AQD_0661/A/1573:1576,
1/A/1590:1594		UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_7AQD_0671/A/1696:1701,
1/A/2033:2035		No text annotation
homologous
IL_4WF9_062
IL_12566.5
IL_7AQD_0681/A/1708:1710,
1/A/2024:2026		Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.2
IL_7AQD_0691/A/1711:1714,
1/A/2022:2023		Major groove platform; stack outside cWW
geometric
IL_1G1X_004
NA
IL_7AQD_1251/A/1711:1719,
1/A/2019:2023		No text annotation
homologous
IL_4WF9_117
IL_80252.2
IL_7AQD_0701/A/1714:1719,
1/A/2019:2022		Intercalated tWH
homologous
IL_4WF9_065
IL_28217.2
IL_7AQD_0711/A/1731:1736,
1/A/1741:1747		tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_7AQD_0721/A/1756:1761,
1/A/1772:1776		tSH-tHW-tWW
geometric
IL_5J7L_022
NA
IL_7AQD_0731/A/1799:1800,
1/A/2009:2011		Single bulged A
homologous
IL_5J7L_312
NA
IL_7AQD_0741/A/1827:1833,
1/A/1842:1850		Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_7AQD_0751/A/1866:1869,
1/A/1931:1932		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_7AQD_0761/A/1870:1871,
1/A/1927:1930		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_7AQD_0771/A/1875:1878,
1/A/1922:1923		Minor groove platform
homologous
IL_7RQB_073
NA
IL_7AQD_0781/A/1880:1884,
1/A/1916:1920		UAA/GAN with extra stack
homologous
IL_7RQB_074
NA
IL_7AQD_0791/A/1885:1889,
1/A/1911:1915		Triple sheared
homologous
IL_7RQB_075
NA
IL_7AQD_0801/A/1893:1896,
1/A/1903:1907		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_7AQD_0811/A/1962:1963,
1/A/1993:1996		Bulged stacked bases
homologous
IL_7A0S_071
IL_24886.3
IL_7AQD_0821/A/1963:1974,
1/A/1990:1993		No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_7AQD_0831/A/2079:2081,
1/A/2646:2647		Major groove platform
homologous
IL_7RQB_078
NA
IL_7AQD_0841/A/2083:2085,
1/A/2641:2644		No text annotation
homologous
IL_5J7L_321
NA
IL_7AQD_0851/A/2096:2098,
1/A/2471:2472		Single bulged U
homologous
IL_7RQB_080
NA
IL_7AQD_0861/A/2099:2100,
1/A/2467:2470		Minor groove platform
homologous
IL_7RQB_081
NA
IL_7AQD_0871/A/2110:2112,
1/A/2265:2268		Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_7AQD_0931/A/2231:2233,
1/A/2249:2250		Single bulged G
geometric
IL_3NDB_004
NA
IL_7AQD_0951/A/2379:2382,
1/A/2393:2396		Double sheared
homologous
IL_5J7L_333
NA
IL_7AQD_0961/A/2430:2432,
1/A/2443:2444		Single bulged U
homologous
IL_5J7L_334
NA
IL_7AQD_0971/A/2482:2483,
1/A/2527:2529		Single stack bend
homologous
IL_4WF9_089
IL_15011.4
IL_7AQD_0981/A/2483:2484,
1/A/2525:2527		Major groove platform
geometric
IL_4WF9_090
IL_48076.9
IL_7AQD_0991/A/2486:2488,
1/A/2522:2523		Major groove platform
geometric
IL_4WF9_091
IL_48076.9
IL_7AQD_1001/A/2488:2490,
1/A/2518:2522		Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA
IL_7AQD_1011/A/2495:2499,
1/A/2509:2513		Double sheared with non-canonical cWW
homologous
IL_4WF9_093
IL_87767.3
IL_7AQD_1021/A/2536:2537,
1/A/2609:2611		Major groove platform
homologous
IL_7RQB_096
NA
IL_7AQD_1031/A/2539:2541,
1/A/2603:2607		Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_7AQD_1041/A/2541:2542,
1/A/2600:2603		No text annotation
geometric
IL_5J7L_341
NA
IL_7AQD_1051/A/2551:2552,
1/A/2569:2572		Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_7AQD_1061/A/2620:2621,
1/A/2630:2632		Single bulged A
homologous
IL_7RQB_101
NA
IL_7AQD_1071/A/2665:2669,
1/A/2803:2811		tSH-tHS-tHW
homologous
IL_7A0S_093
IL_04638.4
IL_7AQD_1081/A/2681:2687,
1/A/2692:2697		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.6
IL_7AQD_1091/A/2709:2713,
1/A/2754:2756		C-loop
homologous
IL_5J7L_347
NA
IL_7AQD_1101/A/2716:2720,
1/A/2747:2751		UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_82016.1
IL_7AQD_1111/A/2724:2725,
1/A/2740:2743		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_7AQD_1121/A/2766:2771,
1/A/2791:2796		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_7AQD_1131/A/2863:2864,
1/A/2903:2905		Major groove platform
homologous
IL_4WF9_106
IL_77710.2
IL_7AQD_1141/A/2868:2870,
1/A/2896:2899		No text annotation
homologous
IL_4WF9_107
IL_05502.1
IL_7AQD_1151/A/2872:2877,
1/A/2890:2894		tHS double platform
homologous
IL_4WF9_108
IL_48489.2
IL_7AQD_1201/B/69:77,
1/B/95:103		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_7AQD_1211/B/78:80,
1/B/92:94		Isolated non-canonical cWW pair
geometric
IL_7A0S_107
IL_71625.4

Problematic loops

#loop idProblemSequence
IL_7AQD_009Major groove minor groove platform; mini C-loop
IL_7AQD_010No text annotation
IL_7AQD_032Double sheared with non-canonical cWW
IL_7AQD_126Single bulged A
IL_7AQD_122Isolated non-canonical cWW pair
IL_7AQD_033Tandem non-canonical cWW pairs
IL_7AQD_042Kink-turn
IL_7AQD_043No text annotation
IL_7AQD_044No text annotation
IL_7AQD_045Isolated cWS basepair
IL_7AQD_055No text annotation
IL_7AQD_064No text annotation
IL_7AQD_088Isolated non-canonical cWW pair
IL_7AQD_089Isolated non-canonical cWW pair
IL_7AQD_090No text annotation
IL_7AQD_091No text annotation
IL_7AQD_092Kink-turn
IL_7AQD_094Isolated tHS basepair with bulges
IL_7AQD_116Major groove intercalation
IL_7AQD_117No text annotation
IL_7AQD_118Major groove minor groove platform; mini C-loop
IL_7AQD_119Symmetric double minor groove platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7AQD_0011/A/30:31,
1/A/521:528,
1/A/555:556		No text annotation
homologous
J3_7A0S_001
J3_68715.2
J3_7AQD_0161/A/30:31,
1/A/521:531,
1/A/542:556		No text annotation
homologous
J3_4WF9_011
J3_17917.2
J3_7AQD_0171/A/32:35,
1/A/492:508,
1/A/515:520		No text annotation
homologous
J3_9DFE_003
J3_07616.2
J3_7AQD_0181/A/56:57,
1/A/70:76,
1/A/109:113		No text annotation
homologous
J3_9DFE_004
J3_01004.2
J3_7AQD_0021/A/56:67,
1/A/74:76,
1/A/109:113		No text annotation
geometric
J3_4WF9_001
J3_47707.1
J3_7AQD_0031/A/272:276,
1/A/295:302,
1/A/416:417		No text annotation
homologous
J3_7RQB_003
NA
J3_7AQD_0191/A/340:344,
1/A/360:369,
1/A/381:385		No text annotation
homologous
J3_4WF9_015
J3_77124.1
J3_7AQD_0041/A/730:736,
1/A/820:822,
1/A/838:841		No text annotation
homologous
J3_5J7L_038
NA
J3_7AQD_0051/A/745:747,
1/A/779:783,
1/A/807:810		No text annotation
homologous
J3_7RQB_005
NA
J3_7AQD_0071/A/1337:1342,
1/A/1670:1672,
1/A/1684:1687		No text annotation
homologous
J3_7RQB_007
NA
J3_7AQD_0081/A/1344:1348,
1/A/1650:1656,
1/A/1665:1668		No text annotation
homologous
J3_4WF9_005
J3_68164.1
J3_7AQD_0091/A/1383:1389,
1/A/1420:1424,
1/A/1441:1442		No text annotation
homologous
J3_7RQB_009
NA
J3_7AQD_0211/A/1470:1475,
1/A/1612:1613,
1/A/1616:1622		No text annotation
homologous
J3_4WF9_017
J3_34864.3
J3_7AQD_0101/A/2120:2122,
1/A/2225:2230,
1/A/2251:2257		No text annotation
homologous
J3_4WF9_007
J3_07703.1
J3_7AQD_0221/A/2311:2313,
1/A/2413:2424,
1/A/2450:2456		No text annotation
homologous
J3_5J7L_070
NA
J3_7AQD_0111/A/2324:2326,
1/A/2350:2352,
1/A/2361:2366		No text annotation
homologous
J3_4WF9_008
J3_05327.2
J3_7AQD_0121/A/2546:2549,
1/A/2574:2576,
1/A/2590:2596		No text annotation
homologous
J3_4WF9_009
J3_32601.6
J3_7AQD_0131/A/2818:2820,
1/A/2831:2836,
1/A/2914:2918		No text annotation
homologous
J3_7RQB_013
NA
J3_7AQD_0141/A/2839:2840,
1/A/2856:2861,
1/A/2907:2911		No text annotation
homologous
J3_7A0S_013
J3_76911.2
J3_7AQD_0151/B/9:14,
1/B/66:68,
1/B/104:107		No text annotation
J4_7AQD_0011/A/271:272,
1/A/417:422,
1/A/446:453,
1/A/468:471		No text annotation
homologous
J4_4WF9_001
J4_94698.2
J4_7AQD_0021/A/340:344,
1/A/360:363,
1/A/367:369,
1/A/381:385		No text annotation
homologous
J4_5J7L_019
NA
J4_7AQD_0031/A/645:648,
1/A/670:674,
1/A/681:684,
1/A/696:703		No text annotation
homologous
J4_5J7L_020
NA
J4_7AQD_0041/A/1310:1315,
1/A/1333:1334,
1/A/1690:1693,
1/A/2038:2039		No text annotation
homologous
J4_4WF9_004
J4_64571.6
J4_7AQD_0051/A/1349:1353,
1/A/1377:1382,
1/A/1443:1444,
1/A/1642:1649		No text annotation
homologous
J4_4WF9_005
J4_77353.2
J4_7AQD_0061/A/1352:1353,
1/A/1377:1382,
1/A/1443:1444,
1/A/1642:1648		No text annotation
homologous
J4_4WF9_006
J4_48150.2
J4_7AQD_0071/A/1490:1492,
1/A/1511:1513,
1/A/1572:1573,
1/A/1594:1595		No text annotation
J4_7AQD_0081/A/1801:1805,
1/A/1817:1821,
1/A/1856:1859,
1/A/2004:2008		No text annotation
homologous
J4_5J7L_025
NA
J4_7AQD_0091/A/1862:1864,
1/A/1934:1935,
1/A/1953:1962,
1/A/1996:2001		No text annotation
homologous
J4_9DFE_008
J4_42306.2
J4_7AQD_0101/A/2314:2318,
1/A/2372:2376,
1/A/2399:2401,
1/A/2410:2412		No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_7AQD_0111/A/2672:2675,
1/A/2703:2705,
1/A/2760:2764,
1/A/2798:2800		No text annotation
homologous
J4_9DFE_010
J4_77044.5
J5_7AQD_0011/A/47:54,
1/A/115:120,
1/A/129:130,
1/A/149:151,
1/A/178:180		No text annotation
homologous
J5_5J7L_013
NA
J5_7AQD_0021/A/271:276,
1/A/295:302,
1/A/416:422,
1/A/446:453,
1/A/468:471		No text annotation
J5_7AQD_0031/A/577:579,
1/A/604:608,
1/A/621:623,
1/A/1301:1302,
1/A/2046:2047		No text annotation
homologous
J5_4WF9_003
J5_43153.6
J5_7AQD_0041/A/628:633,
1/A/715:718,
1/A/856:859,
1/A/1236:1237,
1/A/1290:1296		No text annotation
homologous
J5_4WF9_004
J5_74302.6
J5_7AQD_0051/A/1719:1727,
1/A/1751:1752,
1/A/1780:1781,
1/A/1785:1793,
1/A/2017:2019		No text annotation
homologous
J5_4WF9_005
J5_99177.2
J5_7AQD_0061/A/2086:2093,
1/A/2475:2482,
1/A/2529:2536,
1/A/2611:2617,
1/A/2635:2640		No text annotation
J5_7AQD_0071/A/2103:2106,
1/A/2272:2275,
1/A/2287:2288,
1/A/2310:2311,
1/A/2456:2464		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J6_7AQD_0011/A/45:46,
1/A/181:186,
1/A/217:227,
1/A/234:238,
1/A/265:269,
1/A/473:480		No text annotation
J6_7AQD_0021/A/2103:2106,
1/A/2272:2275,
1/A/2287:2288,
1/A/2310:2313,
1/A/2413:2424,
1/A/2450:2464		No text annotation
J7_7AQD_0011/A/8:15,
1/A/571:577,
1/A/2047:2052,
1/A/2069:2072,
1/A/2654:2659,
1/A/2817:2818,
1/A/2918:2919		No text annotation
J7_7AQD_0021/A/864:869,
1/A/882:883,
1/A/989:992,
1/A/1017:1022,
1/A/1033:1037,
1/A/1209:1210,
1/A/1226:1231		No text annotation

Problematic loops

#loop idProblemSequence
J3_7AQD_006No text annotation
J3_7AQD_020No text annotation
J4_7AQD_012tRNA junction

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