HL_7AQD_058

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AQD_058 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1984

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7AQD|1|A|C|2384
7AQD|1|A|C|2385
7AQD|1|A|U|2386
7AQD|1|A|A|2387
7AQD|1|A|C|2388
7AQD|1|A|A|2389
7AQD|1|A|A|2390
7AQD|1|A|G|2391

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain V

50S ribosomal protein L27

Chain e

50S ribosomal protein L35