HL_7AQD_060

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

7AQD|1|A|C|2435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AQD_060 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.0899

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7AQD|1|A|C|2433
7AQD|1|A|G|2434
7AQD|1|A|C|2435
7AQD|1|A|A|2436
7AQD|1|A|U|2437
7AQD|1|A|G|2438
7AQD|1|A|G|2439
7AQD|1|A|A|2440
7AQD|1|A|A|2441
7AQD|1|A|G|2442

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15