HL_7AQD_074

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUGCACG

Length

9 nucleotides

Bulged bases

7AQD|1|T|C|36, 7AQD|1|T|A|37, 7AQD|1|T|C|38

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AQD_074 not in the Motif Atlas

Homologous match to HL_1H4S_002

Geometric discrepancy: 0.3459

The information below is about HL_1H4S_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

tRNA anticodon loop with synthetase

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

7AQD|1|T|C|31
7AQD|1|T|U|32
7AQD|1|T|U|33
7AQD|1|T|U|34
7AQD|1|T|G|35
7AQD|1|T|C|36
7AQD|1|T|A|37
7AQD|1|T|C|38
7AQD|1|T|G|39

Current chains

Chain T

Ala-tRNA (A/P-site)

Nearby chains

Chain R

Rqc2 homolog RqcH