HL_7ASM_004

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2531

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7ASM|1|A|A|136
7ASM|1|A|G|137
7ASM|1|A|U|138
7ASM|1|A|U|139
7ASM|1|A|A|140
7ASM|1|A|U|141
7ASM|1|A|G|142
7ASM|1|A|U|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L23