HL_7ASM_010

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7ASM|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_010 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1079

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7ASM|1|A|C|348
7ASM|1|A|U|349
7ASM|1|A|G|350
7ASM|1|A|G|351
7ASM|1|A|A|352
7ASM|1|A|A|353
7ASM|1|A|A|354
7ASM|1|A|G|355

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L24