3D structure

PDB id
7ASM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 50S after 30 minutes incubation at 37C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.48 Å

Loop

Sequence
CGU(5MU)GAAAAG
Length
10 nucleotides
Bulged bases
7ASM|1|A|A|796, 7ASM|1|A|A|797
QA status
Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ASM_023 not in the Motif Atlas
Homologous match to HL_4WF9_023
Geometric discrepancy: 0.0909
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

7ASM|1|A|C|789
7ASM|1|A|G|790
7ASM|1|A|U|791
7ASM|1|A|5MU|792
7ASM|1|A|G|793
7ASM|1|A|A|794
7ASM|1|A|A|795
7ASM|1|A|A|796
7ASM|1|A|A|797
7ASM|1|A|G|798

Current chains

Chain A
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain D
50S ribosomal protein L3
Chain Q
50S ribosomal protein L22
Chain Z
50S ribosomal protein L32

Coloring options:


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